View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17912_low_6 (Length: 309)
Name: NF17912_low_6
Description: NF17912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17912_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 84 - 292
Target Start/End: Complemental strand, 17436455 - 17436247
Alignment:
| Q |
84 |
tatataaagcttgtatgacatcatacatccatatgatattatacatcaacaagcattaagcatagaaataatacataattttctcaaggtagtgccaaag |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17436455 |
tatataaagcttgtatgacatcatacatccatatgatattatacatcaacaagcattaaccatataaataatacataattttctcaaggtagtgccaaag |
17436356 |
T |
|
| Q |
184 |
ttatagtcaacctaatgacagaacgttcacttggagcatcataagacatagtttcaaacacaacaaaccctcttgcatatcgaaaccttcctgttccaga |
283 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17436355 |
ttatggtcaacctaatgacagaacgttcacttggagcatcataagacatagtttcaaacacaacaaaccctcttgcatatcgaaaccttcctgttccaga |
17436256 |
T |
|
| Q |
284 |
aacaacaga |
292 |
Q |
| |
|
||||||||| |
|
|
| T |
17436255 |
aacaacaga |
17436247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 17436551 - 17436477
Alignment:
| Q |
13 |
atactaataaaatcatataaaaggtgaaaaaagtaataatactagtaacaagacaagataaattattcctttata |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17436551 |
atactaataaaatcatataaaaggtgaaaaaagtaataatactagtaacaagacaagataaattattcctttata |
17436477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 292
Target Start/End: Complemental strand, 17432515 - 17432374
Alignment:
| Q |
154 |
atacataattttctcaaggtagt---gccaaagttatagtcaacctaatgacagaacgttcacttggagcatcataagacatagtttcaaacacaacaaa |
250 |
Q |
| |
|
|||||||||||||||||| | || |||||||||| |||||| | || |||||| | | | ||| | |||||||||| | |||||||||||||||||| |
|
|
| T |
17432515 |
atacataattttctcaagatggtatagccaaagttacagtcaaacgaagaacagaatgattagttgaatcatcataagatacagtttcaaacacaacaaa |
17432416 |
T |
|
| Q |
251 |
ccctcttgcatatcgaaaccttcctgttccagaaacaacaga |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17432415 |
tcctcttgcatatcgaaaccttcctgttccggaaacaacaga |
17432374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 17432571 - 17432516
Alignment:
| Q |
84 |
tatataaagcttgtatgacatcatacatccatatgatattatacatcaacaagcat |
139 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
17432571 |
tatataaagcttgtcagatatcatacatccatatgatattatttaccaacaagcat |
17432516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University