View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17912_low_9 (Length: 290)
Name: NF17912_low_9
Description: NF17912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17912_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 7191828 - 7192094
Alignment:
| Q |
10 |
aagaatatgtgtcgatgctggcagtctcatgctttcctgtcaaccttctctcgtttccttctccatatgcttccatgtggaccttgtggcgaagggatag |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7191828 |
aagaaaatgtgtcgatgctggcagtctcatgctttcctgtcaaccttctctcgtttccttctccatatgcttccatgtggaccttgtggcgaagggatag |
7191927 |
T |
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| Q |
110 |
attcaaaattgccttctttattacctcaaatcctccatcttccctcatgctctttgtactaaaatacaaatgatattatttatcaacttgataatttagc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7191928 |
attcaaaattgccttctttattacctcaaatcctccatcttccctcatgctctttgtactaaaatacaaatgatattatttatcaacttgataatttagc |
7192027 |
T |
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| Q |
210 |
aagtcaaatacaagacatgtgcaattatgattattcataacaaagtcatgtcaaaaaacctgtaatt |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7192028 |
aagtcaaatacaagacatgtgcaattatgattattcataacaaagtcatgtcaaaaaacctgtaatt |
7192094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 7203146 - 7203409
Alignment:
| Q |
10 |
aagaatatgtgtcgatgctggcagtctcatgctttcctgtcaaccttctctcgtttccttctccatatgcttccatgtggaccttgtggcgaagggatag |
109 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| || |
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| T |
7203146 |
aagaaaatgtgttgatgctggcagtctcatgctttcctgtcaaccttctctcatttccttctccatatgcttcaatgtggatcttgtggcgaagggaaag |
7203245 |
T |
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| Q |
110 |
attcaaaattgccttctttattacctcaaatcctccatcttccctcatgctctttgtact-aaaatacaaatgatattatttatcaacttgataatttag |
208 |
Q |
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| T |
7203246 |
gttcaaaatagccttctttattacctcaaatcctccatcttccctcatgctctttgtactgaaaata-aatttataatatttatcaacttggtaatttag |
7203344 |
T |
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| Q |
209 |
caagtcaaatacaagacatgtgcaattatgattattcataacaaagtcatgtcaaaaaacctgtaatt |
276 |
Q |
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||||||||||| |||||| | ||| |||| ||||||||||||| |||||||||||||||||||| |
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| T |
7203345 |
caagtcaaatataagacaaatacaaatatg---attcataacaaaggtatgtcaaaaaacctgtaatt |
7203409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 7198447 - 7198495
Alignment:
| Q |
121 |
ccttctttattacctcaaatcctccatcttccctcatgctctttgtact |
169 |
Q |
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| T |
7198447 |
ccttcgttattacctcaaatcctacatcttccctcatactctttgtact |
7198495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 7198391 - 7198451
Alignment:
| Q |
10 |
aagaatatgtgtcgatgctggcagtctcatgctttcctgtcaaccttctctcgtttccttc |
70 |
Q |
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| T |
7198391 |
aagaaaatgtgttgatgctcacagtctcatgctttactgtcaactttctctcatttccttc |
7198451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 26287409 - 26287676
Alignment:
| Q |
10 |
aagaatatgtgtcgatgctggcagtctcatgctttcctgtcaaccttctctcgtttccttctccatatgcttccatgtggaccttgtggcgaagggatag |
109 |
Q |
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||||| |||||| |||||| ||| |||||||| |||||||||||||| |||| |||||||||||||||||||| || ||||||| ||| ||||||||| | |
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| T |
26287409 |
aagaaaatgtgttgatgctcgcactctcatgccttcctgtcaaccttgtctcatttccttctccatatgcttcaatatggacctggtgacgaagggatgg |
26287508 |
T |
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| Q |
110 |
attcaaaattgccttctttattacctcaaatcctccatcttccctcatgctctttgtactaaa----atacaaatgatattatttatcaacttgataatt |
205 |
Q |
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|||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||| | | ||| |||||||| ||||||||| | | | |
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| T |
26287509 |
cttcaaaattggcttctttattacttcaaattctccatcttccctcatgctcttagtactaaaaaagaaaaaaaaaatattattcatcaacttggtgaat |
26287608 |
T |
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| Q |
206 |
tagcaagtcaaatacaagacatgtgcaattatgattattcataacaaagtcatgtcaaaaaacctgtaatt |
276 |
Q |
| |
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|||| ||| ||||| || | | |||||||||| ||||||||||||| | ||||||||| ||||||||| |
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| T |
26287609 |
tagcgagttaaatataatagacatgcaattatg---attcataacaaaggcttgtcaaaaagcctgtaatt |
26287676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 26312660 - 26312927
Alignment:
| Q |
10 |
aagaatatgtgtcgatgctggcagtctcatgctttcctgtcaaccttctctcgtttccttctccatatgcttccatgtggaccttgtggcgaagggatag |
109 |
Q |
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||||| |||||| |||||| ||| |||||||| |||||||||||||| |||| |||||||||||||||||||| || ||||||| ||| ||||||||| | |
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| T |
26312660 |
aagaaaatgtgttgatgctcgcactctcatgccttcctgtcaaccttgtctcatttccttctccatatgcttcaatatggacctggtgacgaagggatgg |
26312759 |
T |
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| Q |
110 |
attcaaaattgccttctttattacctcaaatcctccatcttccctcatgctctttgtactaaa----atacaaatgatattatttatcaacttgataatt |
205 |
Q |
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|||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||| | | ||| |||||||| ||||||||| | | | |
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| T |
26312760 |
cttcaaaattggcttctttattacttcaaattctccatcttccctcatgctcttagtactaaaaaagaaaaaaaaaatattattcatcaacttggtgaat |
26312859 |
T |
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| Q |
206 |
tagcaagtcaaatacaagacatgtgcaattatgattattcataacaaagtcatgtcaaaaaacctgtaatt |
276 |
Q |
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|||| ||| ||||| || | | |||||||||| ||||||||||||| | ||||||||| ||||||||| |
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| T |
26312860 |
tagcgagttaaatataatagacatgcaattatg---attcataacaaaggcttgtcaaaaagcctgtaatt |
26312927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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