View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17913_high_1 (Length: 855)
Name: NF17913_high_1
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_high_1 |
 | |
|
| [»] scaffold0263 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 692; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 109 - 838
Target Start/End: Original strand, 31737190 - 31737916
Alignment:
| Q |
109 |
taatttgtataatcgaattcatcaccccggccaaacgccttgctagaaccttggcaagtaatttgtataaacaaccaagcaaagatataggacgataatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31737190 |
taatttgtataatcgaattcatcaccccggccaaacgccttgctagaaccttggcaagtaatttgtataaacaaccaatcaaagatataggacgataatc |
31737289 |
T |
|
| Q |
209 |
cttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcattagcatggaattgatcaaataaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737290 |
cttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcattagcatggaattgatcaaataaa |
31737389 |
T |
|
| Q |
309 |
atcctcacctcatccttgattaaaaccatccggaaccggacttttattaccgtcactatctctcaccaccgcttctatctccattaacgaaaaaggctta |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737390 |
atcctcacctcatccttgattaaaaccatccggacccggacttttattaccgtcactatctctcaccaccgcttctatctccattaacgaaaaaggctta |
31737489 |
T |
|
| Q |
409 |
ataatcaattcctcattttcctccaaagaaagcctctcaaacggcactccatccaacttaggcctctcccacgcaatatcatccacatggttagtgaaaa |
508 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737490 |
at---caattcctcattttcctccaaagaaagcctctcaaacggcactccatccaacttaggcctctcccacgcaatatcatccacatggttagtgaaaa |
31737586 |
T |
|
| Q |
509 |
aatccacaatggccttcctcacatccgaaggcaaagtaacccaaccatcatccacctttaagaccttaatagaatttctcgaccctcttgattttataca |
608 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737587 |
aatccacaacggccttcctcacatccgaaggcaaagtaacccaaccatcatccacctttaaggccttaatagaatttctcgaccctcttgattttataca |
31737686 |
T |
|
| Q |
609 |
attatgaaaaaatctagaattaacatcaccttccttaggccatttagatcttgacctttgcaccgccatcgcatctttcgccttaagaagcctccataac |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31737687 |
attatgaaaaaatctagaattaacatcaccttccttaggccatttagatcttgacctttgcaccgccatcgcatctttcgccttaagaagcctccataac |
31737786 |
T |
|
| Q |
709 |
tcactaaacttatccttccgaataagaatttccgcatcactcaaaccaccttcctcccccttctcatcaagcccattaatatcctccatcaacttctctg |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31737787 |
tcactaaacttatccttccgaataagaatttccgcatcactcaaactaccttcctcccccttctcatcaagcccattaatatcctccatcaacttctccg |
31737886 |
T |
|
| Q |
809 |
cccgcccttccatcccaccatacaccttct |
838 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31737887 |
cccgcccttccatcccaccatacaccttct |
31737916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 13852397 - 13852294
Alignment:
| Q |
201 |
cgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcattagcatggaattgat |
300 |
Q |
| |
|
|||||||||||||| ||| || || || ||||||||||| |||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| |
|
|
| T |
13852397 |
cgataatccttcaactccaaaggtgaagacacttttggaattaaagcaacaaaatacgccaacatggactttggtagcacctcattagcatgaaattgat |
13852298 |
T |
|
| Q |
301 |
caaa |
304 |
Q |
| |
|
|||| |
|
|
| T |
13852297 |
caaa |
13852294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 31737092 - 31737124
Alignment:
| Q |
11 |
cagcacagacagcagtagcgcacccatacagta |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31737092 |
cagcacagacagcagtagcgcacccatacagta |
31737124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 117 - 325
Target Start/End: Original strand, 8247039 - 8247247
Alignment:
| Q |
117 |
ataatcgaattcatcaccccggccaaacgccttgctagaaccttggcaagtaatttgtataaacaaccaagcaaagatataggacgataatccttcaaag |
216 |
Q |
| |
|
||||| |||||||| | || ||||||||||||| || ||| ||||| |||||||||||||||| ||| ||||| || |||| || |||||||||| || |
|
|
| T |
8247039 |
ataatagaattcataattcccgccaaacgccttgttaaaactttggcgagtaatttgtataaactacctagcaatgaaatagagcggtaatccttcatag |
8247138 |
T |
|
| Q |
217 |
ccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcattagcatggaattgatcaaataaaatcctcac |
316 |
Q |
| |
|
|||| |||||||||||||| | ||||| ||||||||||| | ||||| ||||||| ||| | |||||||||||| |||||||| || |||||| |||| |
|
|
| T |
8247139 |
ccattggagatgaaactttcgatatcaatgcaacaaaatacaccaacattccttttgatataatctcattagcatgaaattgatcgaacaaaatcatcac |
8247238 |
T |
|
| Q |
317 |
ctcatcctt |
325 |
Q |
| |
|
||||||||| |
|
|
| T |
8247239 |
ctcatcctt |
8247247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 647 - 806
Target Start/End: Original strand, 8247596 - 8247754
Alignment:
| Q |
647 |
gccatttagatcttgacctttgcaccgccatcgcatctttcgccttaagaagcctccataactcactaaacttatccttccgaataagaatttccgcatc |
746 |
Q |
| |
|
|||||||||||| ||||| || ||| || || ||||||| ||||||||||||||||||| |||| ||||||||| || ||| |||||||| || |
|
|
| T |
8247596 |
gccatttagatcgtgaccattttaccaccttcacatctttagccttaagaagcctccatagttcacaaaacttatctttacgacctcgaatttccatgtc |
8247695 |
T |
|
| Q |
747 |
actcaaaccaccttcctcccccttctcatcaagcccattaatatcctccatcaacttctc |
806 |
Q |
| |
|
|||||| |||| |||| ||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
8247696 |
actcaacccactttcc-ccccctttacatcaagccccttaatatcctccatcaacttctc |
8247754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 186 - 332
Target Start/End: Original strand, 12829238 - 12829388
Alignment:
| Q |
186 |
agcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcat |
285 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||| | ||||||||||||| |||||||||||||||||||| ||||||| |||||||| ||| |||||| |
|
|
| T |
12829238 |
agcaaagaaatagggtggtaatccttcaaagccctaggagatgaaacttccggaatcaaagcaacaaaatacgctaacaaaccttttgggatttcctcat |
12829337 |
T |
|
| Q |
286 |
tagcatggaattgatcaa----ataaaatcctcacctcatccttgattaaa |
332 |
Q |
| |
|
| |||| |||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
12829338 |
tcccatgaaattgatcaaacatatataatccgcacctcatccttgattaaa |
12829388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 328
Target Start/End: Original strand, 40197872 - 40198019
Alignment:
| Q |
181 |
aaccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattac |
280 |
Q |
| |
|
||||||||||||| || || || ||||| |||||||||| || || ||||||| ||||| || |||||||||||||| |||||||| | || | ||| |
|
|
| T |
40197872 |
aaccaagcaaagaaatcggttgaaaatccctcaaagccataggggacaaaactttaggaattaacgcaacaaaataagccaacatccccctcggaaatac |
40197971 |
T |
|
| Q |
281 |
ctcattagcatggaattgatcaaataaaatcctcacctcatccttgat |
328 |
Q |
| |
|
||||||| |||| ||||| ||||| | ||| ||||||||||| ||||| |
|
|
| T |
40197972 |
ctcattaccatgaaattggtcaaacataattctcacctcatctttgat |
40198019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 40388157 - 40388210
Alignment:
| Q |
327 |
attaaaaccatccggaaccggacttttattaccgtcactatctctcaccaccgc |
380 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
40388157 |
attaaaaccatccggacacggacttttattaccatcactatctctaaccaccgc |
40388210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 40387947 - 40388063
Alignment:
| Q |
149 |
tgctagaaccttggcaagtaatttgtataaacaaccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagca |
248 |
Q |
| |
|
||||| ||||||||| |||||||| ||||| || || ||||| |||| || | | ||||||||||| |||||| |||||| ||||| |||||||||| |
|
|
| T |
40387947 |
tgctaaaaccttggctagtaatttatataagcatcctagcaagaatattggcctaaaatccttcaaatccatcgaagatgacactttgggaatcaaagtc |
40388046 |
T |
|
| Q |
249 |
acaaaataagctaacat |
265 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
40388047 |
acaaaaaaagccaacat |
40388063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 165 - 331
Target Start/End: Complemental strand, 29299780 - 29299614
Alignment:
| Q |
165 |
agtaatttgtataaacaaccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaaca |
264 |
Q |
| |
|
||||| ||||| | || |||||| | ||| || |||||| | |||||||| |||||| || || || ||||| |||||||| |||||||||||||| | |
|
|
| T |
29299780 |
agtaacttgtaaatactaccaagtagagaaattggacgaaagtccttcaacatcatcggtgaggacacctttgggatcaaagcgacaaaataagctaata |
29299681 |
T |
|
| Q |
265 |
tcccttttggtattacctcattagcatggaattgatcaaataaaatcctcacctcatccttgattaa |
331 |
Q |
| |
|
| | |||| | |||||||||||||| ||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
29299680 |
aacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaa |
29299614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 325
Target Start/End: Complemental strand, 4901850 - 4901708
Alignment:
| Q |
183 |
ccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtattacct |
282 |
Q |
| |
|
||||||||||| || |||||| ||||||| ||||||| || || |||| |||||||| ||||| ||||| ||||||||||| | || |||| |||| |
|
|
| T |
4901850 |
ccaagcaaagaaatgggacgaaaatccttaaaagccaaaggggaagaaatctttggaattaaagctacaaagtaagctaacatactcttcggtaaaacct |
4901751 |
T |
|
| Q |
283 |
cattagcatggaattgatcaaataaaatcctcacctcatcctt |
325 |
Q |
| |
|
||||||| || ||||||||||| | ||| || || |||||||| |
|
|
| T |
4901750 |
cattagcgtgaaattgatcaaacataattctaacttcatcctt |
4901708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 332
Target Start/End: Complemental strand, 25659977 - 25659795
Alignment:
| Q |
150 |
gctagaaccttggcaagtaatttgtataaacaaccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaa |
249 |
Q |
| |
|
||||| ||||| ||||||| ||| || | ||| |||||||| || || || | |||||||||||| ||| || || || ||||| | ||| |||| | |
|
|
| T |
25659977 |
gctaggacctttgcaagtattttatagagacatccaagcaaggaaatcggtctataatccttcaactccaaaggggacgagactttagtaattaaagtca |
25659878 |
T |
|
| Q |
250 |
caaaataagctaacatcccttttggtattacctcattagcatggaattgatcaaataaaatcctcacctcatccttgattaaa |
332 |
Q |
| |
|
|||||||||| ||||| ||| | || | |||||||||||||| ||||| ||||| ||||| ||||| ||||| || |||||| |
|
|
| T |
25659877 |
caaaataagccaacatacctctcggcaacacctcattagcatgaaattggtcaaacaaaattctcacttcatctttaattaaa |
25659795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 8633 - 8675
Alignment:
| Q |
327 |
attaaaaccatccggaaccggacttttattaccgtcactatct |
369 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
8633 |
attaaaaccatccggacccggacttttattaccatcactatct |
8675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 327 - 401
Target Start/End: Complemental strand, 33483070 - 33482996
Alignment:
| Q |
327 |
attaaaaccatccggaaccggacttttattaccgtcactatctctcaccaccgcttctatctccattaacgaaaa |
401 |
Q |
| |
|
||||||||| ||||| |||||||||||| |||||||| || |||||||||| || ||||||| ||||||||| |
|
|
| T |
33483070 |
attaaaaccgtccggtcccggacttttatccccgtcactctccttcaccaccgcctcaatctccaataacgaaaa |
33482996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 49454632 - 49454579
Alignment:
| Q |
327 |
attaaaaccatccggaaccggacttttattaccgtcactatctctcaccaccgc |
380 |
Q |
| |
|
||||||| |||||||| |||| |||||| ||| |||||||||||||||||||| |
|
|
| T |
49454632 |
attaaaagcatccggacccgggcttttaccaccatcactatctctcaccaccgc |
49454579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University