View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17913_high_2 (Length: 765)
Name: NF17913_high_2
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 85 - 392
Target Start/End: Complemental strand, 1116631 - 1116320
Alignment:
| Q |
85 |
acagcggcggcgtagaagtgtagagtggaggggggtggtggttgagagaggtttgaaaacggagatgacgagtggtaaagccatgatactgatagcaccc |
184 |
Q |
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| T |
1116631 |
acagcggcggcgtagaagtgtagagtggaggggggtggtggttgagagaggtttgaaaacggagatgacgagtggtaaagccatgatactgatagcaccc |
1116532 |
T |
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| Q |
185 |
atcatccttcctcaatccacaacagagataggaacaggattttgtaatgcttttttaacctttttgcacgtcaaaaaacacacact----catgtttgtg |
280 |
Q |
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| T |
1116531 |
atcatccttcctcaatccacaacagagataggaacaggattttgtaatgcttttttaacctttttccacgtcaaaaaacaaacacttatgtatgtttgtg |
1116432 |
T |
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| Q |
281 |
tttcctaggtacaacctcaaactcaaaatctttaaatatatttcccaaaatacccttagcaacttatttaacttccccaaacttactgaattgagattgc |
380 |
Q |
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| T |
1116431 |
tttcctaggtacaacctcaaactcaaaatctttaaatatatttcccaaaatacccttagcaacttatttaacttccccaaacttactgaattgagattgc |
1116332 |
T |
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| Q |
381 |
acgtgcttgaat |
392 |
Q |
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| T |
1116331 |
agctgcttgaat |
1116320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 384 - 749
Target Start/End: Complemental strand, 1114676 - 1114309
Alignment:
| Q |
384 |
tgcttgaattggatttaagtaaatatacattttctttttt------acaaatgaggtaaatgtacttgaattgagtttgagtaccatctagaaatctaga |
477 |
Q |
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| T |
1114676 |
tgcttgaattggatttaggtaaatatacttttttttttttttttttacaaatgaggtaaatgtacttgaattgagtttgagtaccatctagaaatctaga |
1114577 |
T |
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| Q |
478 |
atgtataagtggtacatgaagtaagtttatgtaaatatgcttaaatttagtttacattaacatgtttaaatgtagttgtatttgagtttattaggttata |
577 |
Q |
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| T |
1114576 |
atgtataagtggtacatgaagtaagtttatgtaaatgtgtttaaacttagtctacaggaacatgtttaaatgtagttgtatttgagtttattaggttata |
1114477 |
T |
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| Q |
578 |
tgttgattatgtcatgcttggttgaaacgataaagtgtttaaatgatttcatttctagattgtcagttcatccaaattattgcatgtcaaattcgccaaa |
677 |
Q |
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| T |
1114476 |
tgttgattaggtcatgtttggttgaaacgataaagtgtttaaatgattacatttctagattgtcagtttatccaaattattgcatgtcaaattcgccaaa |
1114377 |
T |
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| Q |
678 |
aatcctacgaattatcccttccaaattgcaacattccctcccattgaacaaacaagttcagaggaataatga |
749 |
Q |
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| T |
1114376 |
aaccctacgaatcatcccttccaaattgcaacat----tcccattgaacaaacaagtttagaggaattatga |
1114309 |
T |
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