View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17913_high_21 (Length: 222)
Name: NF17913_high_21
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 42961472 - 42961661
Alignment:
| Q |
14 |
gatctagacagtgagtttgttaggatttccagaagaaagcaattcagcagcagtgtggcggcgaccaaatctgtcaaaaatggttccaccaactttggtt |
113 |
Q |
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| T |
42961472 |
gatcaagacagtgagtttgttaggatttccagaagaaagcaattcagcagcagtgtggcggcgaccaaatctgtcaaaaatggttccaccaactttggtt |
42961571 |
T |
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| Q |
114 |
ccatacttgtgttcataggtgaatccattaaaaggagacacaccagcatctagaagaccgtccctaaatgctctctgccaatgtgaaaat |
203 |
Q |
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| T |
42961572 |
ccatacttgtgttcataggtgaatccattaaaaggagacacaccagcatctagaagaccgtccctaaatgctctctgccaatgtgaaaat |
42961661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 35607738 - 35607628
Alignment:
| Q |
21 |
acagtgagtttgttaggatttccagaagaaagcaattcagcagcagtgtggcggcgaccaaatctgtcaaaaatggttccaccaactttggttccatact |
120 |
Q |
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| T |
35607738 |
acagtgggtttgtgaggatttccagaagcaggcaattcagcagcagtgtggcagcgaccaaatctgtc-aaaatggttccaccaactttggttccatact |
35607640 |
T |
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| Q |
121 |
tgtgttcatagg |
132 |
Q |
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| T |
35607639 |
tgtgttcatagg |
35607628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 12109850 - 12109923
Alignment:
| Q |
43 |
cagaagaaagcaattcagcagcagtgtggcggcgaccaaatctgtcaaaaatggttccaccaactttggttcca |
116 |
Q |
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| T |
12109850 |
cagaagcaagaagttcggcagctgtgtgtcggcgaccaaatctgtcgaaaatggttccaccaacatttgttcca |
12109923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 9661361 - 9661469
Alignment:
| Q |
43 |
cagaagaaagcaattcagcagcagtgtggcggcgaccaaatctgtcaaaaatggttccaccaactttggttccatacttgtgttcataggtgaatccatt |
142 |
Q |
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|||||| ||| | ||| ||||| ||||| ||| ||| ||||||||| |||||||||||| |||| || |||||| | | || ||||||||||| ||||| |
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| T |
9661361 |
cagaagcaagaagttcggcagctgtgtgtcggtgactaaatctgtcgaaaatggttccatcaacatttgttccaaagatatgatcataggtgaagccatt |
9661460 |
T |
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| Q |
143 |
aaaaggaga |
151 |
Q |
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| T |
9661461 |
aaaaggaga |
9661469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 5503162 - 5503032
Alignment:
| Q |
21 |
acagtgagtttgttaggatttccagaagaaagcaattcagcagcagtgtggcggcgaccaaatctgtcaaaaatggttccaccaactttggttccatact |
120 |
Q |
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||||| ||||||| ||| |||||||||| ||| | ||| ||||| ||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| |
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| T |
5503162 |
acagtaagtttgtcagggtttccagaagcaagaagttcggcagctgtgtgtcggcgaccaaatctgtcgaaaatggttccgccgacttttgttccatata |
5503063 |
T |
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| Q |
121 |
tgtgttcataggtgaatccattaaaaggaga |
151 |
Q |
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| T |
5503062 |
tatgatcataggtgaaaccattaaaaggaga |
5503032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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