View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17913_high_3 (Length: 708)

Name: NF17913_high_3
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17913_high_3
NF17913_high_3
[»] chr3 (4 HSPs)
chr3 (1-698)||(54137106-54137803)
chr3 (120-168)||(13371129-13371177)
chr3 (120-162)||(14548737-14548779)
chr3 (128-168)||(5292530-5292570)
[»] chr5 (8 HSPs)
chr5 (120-169)||(37588369-37588418)
chr5 (120-168)||(8651363-8651410)
chr5 (120-157)||(35553209-35553246)
chr5 (120-169)||(37526208-37526257)
chr5 (140-168)||(10280608-10280636)
chr5 (120-156)||(18902807-18902843)
chr5 (120-168)||(20028500-20028548)
chr5 (120-168)||(38104867-38104915)
[»] chr4 (8 HSPs)
chr4 (122-167)||(2592320-2592365)
chr4 (124-168)||(5131260-5131304)
chr4 (122-168)||(19429723-19429769)
chr4 (122-168)||(25487575-25487621)
chr4 (120-168)||(7694020-7694068)
chr4 (123-167)||(27123363-27123407)
chr4 (120-168)||(29263382-29263430)
chr4 (120-168)||(53673668-53673716)
[»] chr1 (9 HSPs)
chr1 (123-172)||(6981507-6981556)
chr1 (120-172)||(12564505-12564557)
chr1 (122-168)||(26916215-26916261)
chr1 (120-165)||(35590905-35590950)
chr1 (120-168)||(6279411-6279459)
chr1 (120-168)||(10199418-10199466)
chr1 (120-168)||(11893603-11893651)
chr1 (120-168)||(28077079-28077127)
chr1 (120-168)||(47598431-47598479)
[»] scaffold0089 (1 HSPs)
scaffold0089 (120-168)||(33637-33685)
[»] chr8 (5 HSPs)
chr8 (120-168)||(28769349-28769397)
chr8 (120-162)||(11795104-11795146)
chr8 (120-168)||(26479797-26479845)
chr8 (120-168)||(30277255-30277303)
chr8 (120-168)||(42215092-42215140)
[»] chr7 (5 HSPs)
chr7 (120-168)||(24363611-24363659)
chr7 (120-172)||(44821971-44822023)
chr7 (126-168)||(46082054-46082096)
chr7 (120-157)||(39505968-39506005)
chr7 (120-168)||(7244692-7244740)
[»] chr6 (6 HSPs)
chr6 (120-168)||(20512654-20512702)
chr6 (126-168)||(7785754-7785796)
chr6 (122-168)||(27909648-27909694)
chr6 (120-168)||(281858-281906)
chr6 (123-167)||(2460162-2460206)
chr6 (120-168)||(34939756-34939804)
[»] chr2 (5 HSPs)
chr2 (120-168)||(1939342-1939390)
chr2 (120-168)||(6227763-6227811)
chr2 (120-168)||(11488289-11488337)
chr2 (120-168)||(35379026-35379074)
chr2 (120-168)||(41817180-41817228)


Alignment Details
Target: chr3 (Bit Score: 658; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 1 - 698
Target Start/End: Complemental strand, 54137803 - 54137106
Alignment:
Q  1 gcaatttatggattcacttcatatctatctatccctttccgattctctctcctccacacttcgacaggtacatacataacctaatcaaattcaatttaat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54137803 gcaatttatggattcacttcataactatctatccctttccgattctctctcgtccacacttcgacaggtacatacataacctaatcaaattcaatttaat 54137704  T
Q  101 taccactgattaatatgaatcataagctattctggtgagcttatggaaataagctgataacaacttattgacgaggcatatgctatttctacttattgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54137703 taccactgattaatatgaatcataagctattctggtgagcttatggaaataagctgataacaacttattgacgaggcatatgctatttctacttattgaa 54137604  T
Q  201 gctttctcaaacaatttcataatttcagtttataagttcagatatgatgcaatgctcctgatattcacaggggtggctggagttagcaagtgctagatat 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54137603 gctttctcaaacaatttaataatttcagtttataagttcagatatgatgcaatgctcctgatattcacaggggtggctggagttagcaagtgctagatat 54137504  T
Q  301 tctatgggtacttcgcgcgttaatagttctttattggacctcaaattccattcagctgctacaacattgaagataaccgaaaatgaagatggtaaattct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54137503 tctatgggtacttcgcgcgttaatagttctttattggacctcaaattccattcagctgctacaatattgaagataaccgaaaatgaagatggtaaattct 54137404  T
Q  401 gtgttttcacttgcttttttatgattcctatttgtaacataacatgtactactttatatgattcaataggtacacaaccacacttcacgttgcagaaatg 500  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54137403 gtgttttcacttgcttttttatgatgcctttttgtaacataacatgtactactttatatgattcaataggtacacaaccacactttacgttgcagaaatg 54137304  T
Q  501 ggtatcctctgaacacgaacttgaaagtactaaattagaagacaagaatgagcagccacaggatagtaatagtatcaaatcatctggtacagttttcttc 600  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54137303 ggtatcctctgaacacgaacttgaaagtactaaattagaatacaagaatgagcagccacaggatagtaatagtatcaaatcatctggtacagttttcttc 54137204  T
Q  601 tctcaataccaaatactagtatgtctgttgtttctcattttcttacttggttttgcaaccattacagagaacttaatgggacttgcagataatgatga 698  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54137203 tctcaataccaaatactactatgtctgttgtttctcattttcttactttgttttgcaaccattacagagaacttaatgggacttgcagataatgatga 54137106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 13371129 - 13371177
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||| ||  ||||||||||||||||||||| ||||||||||    
T  13371129 tcataagctattatgaagagcttatggaaataagctgaaaacaacttat 13371177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 14548779 - 14548737
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataaca 162  Q
    ||||||| |||||||| ||||||||||||||||||||| ||||    
T  14548779 tcataagttattctggagagcttatggaaataagctgaaaaca 14548737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 5292570 - 5292530
Alignment:
Q  128 tattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||| ||| ||||||||||||||||||||| ||||||||||    
T  5292570 tattatggagagcttatggaaataagctgaaaacaacttat 5292530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 37588418 - 37588369
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttatt 169  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| ||||||    
T  37588418 tcataagttattctggagagcttatggaaataagctgaaaacagcttatt 37588369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 8651410 - 8651363
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  8651410 tcataagctattctgg-gagcttatggaaatatgctgaaaacaacttat 8651363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 35553246 - 35553209
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctga 157  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  35553246 tcatacgctattctggagagcttatggaaataagctga 35553209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 37526257 - 37526208
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttatt 169  Q
    ||||||| | |||||| ||||||||||||||||||||| |||| ||||||    
T  37526257 tcataagttgttctggagagcttatggaaataagctgaaaacagcttatt 37526208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 10280636 - 10280608
Alignment:
Q  140 cttatggaaataagctgataacaacttat 168  Q
    |||||||||||||||||||||||||||||    
T  10280636 cttatggaaataagctgataacaacttat 10280608  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 18902807 - 18902843
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctg 156  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  18902807 tcataagctattttggggagcttatggaaataagctg 18902843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 20028548 - 20028500
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||| ||  |||||||| |||||||||||| ||||||||||    
T  20028548 tcataagctattatgaagagcttatagaaataagctgaaaacaacttat 20028500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 38104915 - 38104867
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||  | | ||||||||||||||||||||| ||||||||||    
T  38104915 tcataagctatcttagagagcttatggaaataagctgaaaacaacttat 38104867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 2592365 - 2592320
Alignment:
Q  122 ataagctattctggtgagcttatggaaataagctgataacaactta 167  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||||    
T  2592365 ataagctattttggagagcttatggaaataagctgaaaacaactta 2592320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 5131304 - 5131260
Alignment:
Q  124 aagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||| |||| ||||||||||||||||||||| ||||||||||    
T  5131304 aagctatcctggagagcttatggaaataagctgaaaacaacttat 5131260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 19429723 - 19429769
Alignment:
Q  122 ataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||||    
T  19429723 ataagctatcctggagagcttatggaaataagctgaaaacagcttat 19429769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 25487621 - 25487575
Alignment:
Q  122 ataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||||| || |||||||||||||| |||||||| |||||    
T  25487621 ataagctattctggggaacttatggaaataagttgataacagcttat 25487575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 7694068 - 7694020
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||| ||| |||| ||| ||||||||||||||||| ||||||||||    
T  7694068 tcataagttatcctggagagtttatggaaataagctgaaaacaacttat 7694020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 27123407 - 27123363
Alignment:
Q  123 taagctattctggtgagcttatggaaataagctgataacaactta 167  Q
    ||||||||| ||| ||||||||||||||||| ||| |||||||||    
T  27123407 taagctattatggagagcttatggaaataagttgaaaacaactta 27123363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 29263382 - 29263430
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||||||| |||  |||||| |||||||||||||| ||||||||||    
T  29263382 tcataagctatcctgcagagcttgtggaaataagctgaaaacaacttat 29263430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 53673716 - 53673668
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||  ||| ||||||||| ||||||||||| ||||||||||    
T  53673716 tcataagctatcttggagagcttatgtaaataagctgaaaacaacttat 53673668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 6981507 - 6981556
Alignment:
Q  123 taagctattctggtgagcttatggaaataagctgataacaacttattgac 172  Q
    ||||||||||||| ||| ||||||||||| ||||| ||||||||||||||    
T  6981507 taagctattctggagagtttatggaaatatgctgaaaacaacttattgac 6981556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 12564557 - 12564505
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttattgac 172  Q
    |||||||||||  ||| || |||||||||||||||||| ||||||||||||||    
T  12564557 tcataagctatcttggagaacttatggaaataagctgaaaacaacttattgac 12564505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 26916215 - 26916261
Alignment:
Q  122 ataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||| |||||||| ||||||||||||||||||||  ||||||||||    
T  26916215 ataagttattctggagagcttatggaaataagctggaaacaacttat 26916261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 35590950 - 35590905
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaact 165  Q
    |||||||||||  ||| ||||||||||||||||||||| |||||||    
T  35590950 tcataagctatcatggagagcttatggaaataagctgaaaacaact 35590905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 6279411 - 6279459
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||||||| || | ||||||||||||||| ||||| ||||||||||    
T  6279411 tcataagctatcctagagagcttatggaaatacgctgaaaacaacttat 6279459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 10199466 - 10199418
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||| | | ||||||||| ||||||||||| ||||||||||    
T  10199466 tcataagctattttagagagcttatgaaaataagctgaaaacaacttat 10199418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 11893651 - 11893603
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||| ||  ||| ||||||||||||||||| ||||||||||    
T  11893651 tcataagctattttgaagagtttatggaaataagctgaaaacaacttat 11893603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 28077127 - 28077079
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||| | | |||||||| |||||||||||| ||||||||||    
T  28077127 tcataagctattttagagagcttattgaaataagctgaaaacaacttat 28077079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 47598479 - 47598431
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||||||| |||| |||||||||| || ||||||| ||||||||||    
T  47598479 tcataagctatcctggagagcttatggcaacaagctgaaaacaacttat 47598431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 33685 - 33637
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||| ||  ||||||||||||||||||||| ||||||||||    
T  33685 tcataagctattatgaagagcttatggaaataagctgaaaacaacttat 33637  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 28769397 - 28769349
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||| ||| ||| ||||||||||||||||| ||||||||||    
T  28769397 tcataagctattttggagagtttatggaaataagctgaaaacaacttat 28769349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 11795104 - 11795146
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataaca 162  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||    
T  11795104 tcataagctattatggagagcttatggaaataagctgaaaaca 11795146  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 26479797 - 26479845
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||| ||||||||| ||||||||||||||| ||||| || |||||||    
T  26479797 tcataacctattctggagagcttatggaaatacgctgaaaaaaacttat 26479845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 30277303 - 30277255
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||||||| || | ||| ||||||||||||||||| ||||||||||    
T  30277303 tcataagctatcctagagagtttatggaaataagctgaaaacaacttat 30277255  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 42215140 - 42215092
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||  ||| ||||||||| ||||||||||| ||||||||||    
T  42215140 tcataagctatcttggagagcttatgtaaataagctgaaaacaacttat 42215092  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 24363659 - 24363611
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||||||| |||| ||| ||||||||||||||||| ||||||||||    
T  24363659 tcataagctatcctggagaggttatggaaataagctgaaaacaacttat 24363611  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 44821971 - 44822023
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttattgac 172  Q
    |||||||||||||||| || |||||| ||||||| ||| ||||||||||||||    
T  44821971 tcataagctattctggagaacttatgaaaataagttgaaaacaacttattgac 44822023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 46082054 - 46082096
Alignment:
Q  126 gctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||    
T  46082054 gctattctggagagcttatgaaaataagctgaaaacaacttat 46082096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 39505968 - 39506005
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctga 157  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  39505968 tcataagctattctggagagtttatggaaataagctga 39506005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 7244692 - 7244740
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||  ||| ||||||||| ||||||||||| ||||||||||    
T  7244692 tcataagctatattggagagcttatgaaaataagctgaaaacaacttat 7244740  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 20512702 - 20512654
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||| ||  ||||||||||||||||||||| ||||||||||    
T  20512702 tcataagctattatgaagagcttatggaaataagctgaaaacaacttat 20512654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 7785796 - 7785754
Alignment:
Q  126 gctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||    
T  7785796 gctattttggagagcttatggaaataagctgaaaacaacttat 7785754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 27909694 - 27909648
Alignment:
Q  122 ataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||| | |||| ||||||||||||||||||||| ||||||||||    
T  27909694 ataagctttactggagagcttatggaaataagctgaaaacaacttat 27909648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 281906 - 281858
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||||||| || | ||||| ||||||||||||||| ||||||||||    
T  281906 tcataagctatcctagagagctcatggaaataagctgaaaacaacttat 281858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 2460206 - 2460162
Alignment:
Q  123 taagctattctggtgagcttatggaaataagctgataacaactta 167  Q
    ||||||||| ||| ||||||||||||||||| ||| |||||||||    
T  2460206 taagctattatggagagcttatggaaataagttgaaaacaactta 2460162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 34939756 - 34939804
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||||||| |||| ||| ||||||||||||||||| ||||| ||||    
T  34939756 tcataagctatcctggagagtttatggaaataagctgaaaacaatttat 34939804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 1939390 - 1939342
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||||||| |||| ||||||||||||||||| ||| |||| |||||    
T  1939390 tcataagctatactggagagcttatggaaataagttgaaaacagcttat 1939342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 6227763 - 6227811
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||| ||| |||||||||| || ||||||| ||||||||||    
T  6227763 tcataagctattttggagagcttatggtaacaagctgaaaacaacttat 6227811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 11488289 - 11488337
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    ||||||||||| |||| ||| ||||| ||||||||||| ||||||||||    
T  11488289 tcataagctatcctggagagattatgcaaataagctgaaaacaacttat 11488337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 35379074 - 35379026
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||||||||  ||| ||||||||| ||||||||||| ||||||||||    
T  35379074 tcataagctatcttggagagcttatgaaaataagctgaaaacaacttat 35379026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 41817180 - 41817228
Alignment:
Q  120 tcataagctattctggtgagcttatggaaataagctgataacaacttat 168  Q
    |||||| |||| |||| ||||||||||||||||||||| ||||| ||||    
T  41817180 tcataaactatcctggagagcttatggaaataagctgaaaacaaattat 41817228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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