View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17913_high_4 (Length: 625)
Name: NF17913_high_4
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 10 - 620
Target Start/End: Complemental strand, 8816424 - 8815819
Alignment:
| Q |
10 |
tagataatactctgtccatacatggtagtgatcataaagttcaatgaatattattatctgaagtatgatcaacggaatgcaaaattacataaatcacttt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8816424 |
tagataatactctgtccatacatggtagtgatcataaagttcaatgaatattattatctcaagtatgatcaacagaatgcaaaattacataaatcacttt |
8816325 |
T |
|
| Q |
110 |
atgtagattttgtaaaggtgataaagtacttggaatttgctattgttatcaggcacaatctgaaagaaaaagttcacttatcctgaagattcaaaagtgc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8816324 |
atgtagattttgtaaaggtgataaagtacttggaatttgctattgttatcaggtacaatctgaaagaaaaagttcacttatcctgaagattcaaaagtgc |
8816225 |
T |
|
| Q |
210 |
ttataaattgtacatgagtaaacaaagcaagtctaccaatggaagaacacaagtgtcaaagttttcaggtatcctattggctcaagtaagttaaaattta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8816224 |
ttataaattgtacatgagtaaacaaagcaagtctaccaatggaagaacacaagtgtcaaagttttcaggtatcctattggctcaggtaagttaaaattta |
8816125 |
T |
|
| Q |
310 |
atccaaatggaaaatttgaagctgacttttctggtgtacagcaatgaaaagtgctttgcgttacagttagaatatttatgagatgatttcaattacttag |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8816124 |
atccaaatggaaaatttgaagctgacttttctggtgtacagcaatgaaaagtgctttgcgttacagttagaatatttatgacatgatttcaattacttag |
8816025 |
T |
|
| Q |
410 |
acattaaggaaacaattagtactattaacttacatttattactttgttaaattttctagttaatactgtatctgaaaacatatgatctactactacatac |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8816024 |
acattaaggaaacaattagtactattaacttacatttattactttgttaaattttctagttaa-----tatctgaaaacatatgatctactactacatac |
8815930 |
T |
|
| Q |
510 |
atcggtaatgtatttgcgagaaagtgagtgttaaagacaagcaagttactgtacatgtttgattatgcataataacaatagcatgcttagttctacttta |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8815929 |
atcggtaatgtatttgcgagaaagtgagtgttaaagacaagcatgttactgtacatgtttgattatgcataataacaataacatgcttagttctacttta |
8815830 |
T |
|
| Q |
610 |
atccatatttt |
620 |
Q |
| |
|
||||||||||| |
|
|
| T |
8815829 |
atccatatttt |
8815819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University