View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17913_high_5 (Length: 569)

Name: NF17913_high_5
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17913_high_5
NF17913_high_5
[»] chr6 (7 HSPs)
chr6 (17-281)||(1940044-1940310)
chr6 (24-337)||(1954465-1954764)
chr6 (12-221)||(1925776-1925988)
chr6 (498-553)||(1953825-1953880)
chr6 (396-467)||(9852104-9852175)
chr6 (508-549)||(1939957-1939998)
chr6 (513-553)||(1924532-1924572)
[»] chr3 (4 HSPs)
chr3 (370-473)||(38511214-38511318)
chr3 (416-476)||(46835555-46835615)
chr3 (397-472)||(45640689-45640764)
chr3 (397-467)||(51646886-51646956)
[»] chr1 (2 HSPs)
chr1 (412-472)||(44621419-44621479)
chr1 (396-468)||(47932414-47932486)
[»] chr5 (1 HSPs)
chr5 (412-471)||(34509399-34509458)
[»] chr7 (2 HSPs)
chr7 (412-472)||(26000017-26000077)
chr7 (395-470)||(44111380-44111456)
[»] chr2 (2 HSPs)
chr2 (397-467)||(24538238-24538308)
chr2 (397-464)||(32277045-32277112)
[»] chr8 (1 HSPs)
chr8 (397-476)||(30850194-30850273)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 1940310 - 1940044
Alignment:
Q  17 cacagacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattttcatt 116  Q
    |||| ||||||||||||||| ||| |||||| | ||||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||| ||||||    
T  1940310 cacacacagcattgtgttctagaacaaaaagggtctgcaaagttgtgacaccagcccaactattacgaatgtcacctgaaattgctgttccatcttcatt 1940211  T
Q  117 atgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcacacttcca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1940210 atgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgtccaaaacttcttgattgcttccatatatcacacttcca 1940111  T
Q  217 tccctattatcatatatatagtttcatg-catctcatgtgtaagttcaa-ttagaaggtcttaaatt 281  Q
    ||||||||||||||||  |   |||||| ||| |||||||||||||||| ||| |||||||||||||    
T  1940110 tccctattatcatatagtttcattcatgtcatgtcatgtgtaagttcaatttaaaaggtcttaaatt 1940044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 24 - 337
Target Start/End: Complemental strand, 1954764 - 1954465
Alignment:
Q  24 agcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattttcattatgaaga 123  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||| ||   |    
T  1954764 agcattgtgttcttgaataaagagagcctgcaaagttgagacaccagcccaactattgcgaacgtcacctgaaattgctactccattttcattttgctta 1954665  T
Q  124 agttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcacacttccatccctat 223  Q
    ||   ||| || | | ||||||| |  || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1954664 agggtaccatcgtctaatatttttaacttcccatctttgaaagttctcactttgttcaaaacttcttgattgcttccatatatcacacttccatccctat 1954565  T
Q  224 tatcatatatatagtttcatgcatctcatgtgtaagttcaattagaaggtcttaaattgagactatatatctaattaagtataattactagacaaaatta 323  Q
    |||||    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||    
T  1954564 tatca----tatagtttcatgcatgtcatgtgtaagttcaattagaaggtcttaaattgagacta----------taagtataattactagacaaaatta 1954479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 1925988 - 1925776
Alignment:
Q  12 agcagcacagacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattt 111  Q
    |||| |||| |||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||| |    
T  1925988 agcatcacaaacagcattgtgttcttgaatgaaaagggcttgcaaagttgaaacaccagcccaactattgcgaacatcacctgaaattgcaactccatct 1925889  T
Q  112 tcattatgaagaagttca---ccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatca 208  Q
    || || || ||||| | |   ||||||||||||||||| |  || ||||||| | |||||||||||| | |||||| ||| | |||||||||||||||||    
T  1925888 tcgttttgtagaagatgatttccttcctttgatatttttaacttcccatcttgggaagtcctcacttgggtcaaaatttcatcattgcttccatatatca 1925789  T
Q  209 cacttccatccct 221  Q
    |||||||||||||    
T  1925788 cacttccatccct 1925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 498 - 553
Target Start/End: Complemental strand, 1953880 - 1953825
Alignment:
Q  498 tatggaaaatattcttaccaccaaggtgtacgaatgtttgcatgtccagtcttgat 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1953880 tatggaaaatattcttaccaccaaggtgtacgaatgtttgcatgtccagtcttgat 1953825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 396 - 467
Target Start/End: Complemental strand, 9852175 - 9852104
Alignment:
Q  396 attggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 467  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||  |||||||||| ||||| |||||||||    
T  9852175 attggagccaaaaagattaggattagggttggcacaattttttagcagtgttattcatattagaaataagta 9852104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 508 - 549
Target Start/End: Complemental strand, 1939998 - 1939957
Alignment:
Q  508 attcttaccaccaaggtgtacgaatgtttgcatgtccagtct 549  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  1939998 attcttaccaccaaggtgtacggatgtttgcatgtccggtct 1939957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 553
Target Start/End: Complemental strand, 1924572 - 1924532
Alignment:
Q  513 taccaccaaggtgtacgaatgtttgcatgtccagtcttgat 553  Q
    |||||||||||||| || ||||||| |||||||||||||||    
T  1924572 taccaccaaggtgtgcgtatgtttggatgtccagtcttgat 1924532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 473
Target Start/End: Original strand, 38511214 - 38511318
Alignment:
Q  370 tagattgaaatcaaaggccaccatacattggagccaaaaag-attaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaa 468  Q
    |||||||||||||| |||||||| ||||||| ||| ||||  ||||||||||| |||  || ||||| ||||||||||||||| ||||| |||||||||     
T  38511214 tagattgaaatcaacggccaccaaacattggcgcccaaaatcattaggattagagtttgcaaattttgttaaaagtgttattcatattaaaaataagtat 38511313  T
Q  469 gatat 473  Q
    |||||    
T  38511314 gatat 38511318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 476
Target Start/End: Original strand, 46835555 - 46835615
Alignment:
Q  416 gattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagatatgat 476  Q
    |||||||||||||||| ||| |||| | |||||||| ||||| ||||||||| ||||||||    
T  46835555 gattagggttgacacaatttgttaatattgttattcatattagaaataagtatgatatgat 46835615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 472
Target Start/End: Original strand, 45640689 - 45640764
Alignment:
Q  397 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 472  Q
    ||||||||||||  ||||||||||||||||||||| ||| |||| | |||||||  ||||| | |||| |||||||    
T  45640689 ttggagccaaaaccattaggattagggttgacacaatttgttaacattgttattgatattagagataaataagata 45640764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 467
Target Start/End: Complemental strand, 51646956 - 51646886
Alignment:
Q  397 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 467  Q
    ||||||||||||| || | ||||||||||||||||  || |||| | |||||||| ||||| |||||||||    
T  51646956 ttggagccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagta 51646886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 412 - 472
Target Start/End: Original strand, 44621419 - 44621479
Alignment:
Q  412 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 472  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||    
T  44621419 ttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagata 44621479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 468
Target Start/End: Complemental strand, 47932486 - 47932414
Alignment:
Q  396 attggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaa 468  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| | ||||||| |||||| || |||||||    
T  47932486 attggagccaaaaagattaggattagagttgacacaatttcttaacattgttattagtattagaattaagtaa 47932414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 412 - 471
Target Start/End: Original strand, 34509399 - 34509458
Alignment:
Q  412 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagat 471  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||    
T  34509399 ttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagat 34509458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 26000077 - 26000017
Alignment:
Q  412 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 472  Q
    ||||||||||||||| ||||||||||||| | ||||||| |||||| ||||||||||||||    
T  26000077 ttaggattagggttgtcacattttcttaacattgttattagtattagaaataagtaagata 26000017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 470
Target Start/End: Complemental strand, 44111456 - 44111380
Alignment:
Q  395 cattggagccaaaaagat-taggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaaga 470  Q
    |||||| |||||| |||| ||| |||||||||||||  ||||||||| | ||||||| |||||  ||||||||||||    
T  44111456 cattggtgccaaagagatgtagaattagggttgacaatttttcttaacattgttattagtattggaaataagtaaga 44111380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 397 - 467
Target Start/End: Complemental strand, 24538308 - 24538238
Alignment:
Q  397 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 467  Q
    ||||||||||||  ||||||||||||||||||||| ||| |||| | |||||||| ||||| |||||||||    
T  24538308 ttggagccaaaactattaggattagggttgacacaatttgttaacattgttattcatattagaaataagta 24538238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 464
Target Start/End: Complemental strand, 32277112 - 32277045
Alignment:
Q  397 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataa 464  Q
    |||| |||||||  ||||||||||||||||||||||||| |||| | ||||||| |||||| ||||||    
T  32277112 ttggcgccaaaataattaggattagggttgacacatttttttaacattgttattagtattagaaataa 32277045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 476
Target Start/End: Original strand, 30850194 - 30850273
Alignment:
Q  397 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagatatgat 476  Q
    ||||||||||||  |||| ||||||||||| |||| ||| |||  |||||||||| ||||| ||||||||| ||||||||    
T  30850194 ttggagccaaaatcattaagattagggttggcacaattttttagcagtgttattcatattagaaataagtatgatatgat 30850273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University