View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17913_high_7 (Length: 478)
Name: NF17913_high_7
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 8509128 - 8508752
Alignment:
| Q |
1 |
tgaagagaggatttggggagatggttagatagtgataaaattgggcactggaaattggccacaactatatgtagatagataactttggagttcaaatttg |
100 |
Q |
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| T |
8509128 |
tgaagagaggatttggggggatggttagatagtgataaaattgggcactggaaattgaccacaactatatgtagatagataactttggagttcaaatttg |
8509029 |
T |
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| Q |
101 |
aaattagaaattagaagagataagagcaatgtattgagaagatggaaatggttgatgaattgaaaaacnnnnnnnnnnnnngtgcaatgatagaggaagc |
200 |
Q |
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| T |
8509028 |
aaattggaaattagaagagataagagcaatgtattgggaagatggaaatggttgatgaattgaaaaactttttctttttttgtgcaatgatagaggaagc |
8508929 |
T |
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| Q |
201 |
ggtggaatacacatggtggaaggtgaaagttttcgtgtgtttttgttttcttaattaaaaat-aaaataatatttgaaagaataaattgttcaaattaat |
299 |
Q |
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| T |
8508928 |
aatggaatacacatggtggaaggtgaaagttctcgtatgtttttgttttcttaattaaaaataaaaataatgtttgaaaaaataaattgttcaaattaat |
8508829 |
T |
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| Q |
300 |
ggtggaaggtcaaatgtatcacgttttacctttaccatgaagcttgtcactgcaattccaataaaagaaattcgaaattcaaa |
382 |
Q |
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| T |
8508828 |
ggtggaaggtcaaatgtgtcacgt------tttaccatgaagcttgttactgcaattccaataaaagaaattcgaaattcaaa |
8508752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 32149832 - 32149783
Alignment:
| Q |
280 |
aataaattgttcaaattaatggtggaaggtcaaatgtatcacgttttacc |
329 |
Q |
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| T |
32149832 |
aataaattgttcaaattaatggtggaaggtcaaatgtatcacgttttacc |
32149783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 32149749 - 32149717
Alignment:
| Q |
350 |
tgcaattccaataaaagaaattcgaaattcaaa |
382 |
Q |
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| T |
32149749 |
tgcaattccaataaaaaaaattcgaaattcaaa |
32149717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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