View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17913_high_8 (Length: 468)
Name: NF17913_high_8
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 266 - 453
Target Start/End: Complemental strand, 6019962 - 6019775
Alignment:
| Q |
266 |
gatatttagattgaaaatgatgaaggtctaatattatcaannnnnnnaaaataaaggtctaatattagttgttcatcgttatcccttttgtatttatttc |
365 |
Q |
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| T |
6019962 |
gatatttagattgaaaatgatgaaggtctaatattatcaatttttttaaaataaaggtttgatattagttgttcatcgttatcccttttgtatttatttc |
6019863 |
T |
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| Q |
366 |
ttactacatgacataaatggtgcgataaacagtgtgagattttgttgatagaaaggnnnnnnncgtatgagatttcttgggtaattat |
453 |
Q |
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| T |
6019862 |
ttactacatgacataaatggtgcgataaacagtgtgatattttgttgatagaaaggaaaaaagcgtgtgagatttcttgggtaattat |
6019775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 6020214 - 6020023
Alignment:
| Q |
16 |
atacaaattatttattcaacgctgccattgaaaaattaacacagagatttaatgtctctcaggatcattaatctaacaaa-gtcgtaagatgttgtatac |
114 |
Q |
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| T |
6020214 |
atacaaattatttatttaacgctgccactaaaaaattaacacagagatttaatgtctctcaggatcattaatctaacaaaggtcgtaggatattgcatag |
6020115 |
T |
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| Q |
115 |
aatatgtgtggcttg----taaaaccaaaacatttttaatttcgggttgtgttgtagttgtcattcttgttgtattatgaagaaccggtttctct |
205 |
Q |
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| T |
6020114 |
aata--tgtggcttgtaattaataccaaaa-aaatttaatgtcgggttgtgttgttgttgtcgttcttgttgtattatgaagaaccggtttctct |
6020023 |
T |
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