View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17913_high_9 (Length: 372)
Name: NF17913_high_9
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_high_9 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 14598200 - 14597827
Alignment:
| Q |
1 |
aagcatttgaaggagactggggctgaccctttggagcctgttaaagtattaaaggccacttggatggctgatggcacccattggcccggcacttggggtt |
100 |
Q |
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| T |
14598200 |
aagcatttgaaggagactggggctgaccctttggagcctgttaaagtattgaaggccacttggatggctgatggcacccattggcccggcacttggggtt |
14598101 |
T |
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| Q |
101 |
cttcttctagggaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatac--ctaagaataaattcaatcctgaactttaac |
198 |
Q |
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| T |
14598100 |
cttcttctagcgaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatatatctaagaataaattcaatcctgaactttaac |
14598001 |
T |
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| Q |
199 |
ttatgtttcacatatatatcataatttaaatgcatgcatgtatataaataggttatgttgaagccgcccagtcccgatccattaatgggaagtgcagacg |
298 |
Q |
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| T |
14598000 |
ttatgtttcacatatatttcataatttaaatgcatgcatgtatataaataggtgatgttgaagccgcccagccctgatccgttaatgggaagtgaagacg |
14597901 |
T |
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| Q |
299 |
acaagatcatagatttctctgaggtagatacacgtttgccgatgttagtatatgtatctcgagagaagaggcca |
372 |
Q |
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| T |
14597900 |
acaagatcatagatttctctgaggtagatacacgtttgccgatgttagtatatgtatctcgagagaagaggcca |
14597827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 14610276 - 14610456
Alignment:
| Q |
1 |
aagcatttgaaggagactggggctgaccctttggagcctgttaaagtattaaaggccacttggatggctgatggcacccattggcccggcacttggggtt |
100 |
Q |
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| T |
14610276 |
aagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaaggctacctggatggctgatggcacccattggcctggtacgtgggctt |
14610375 |
T |
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| Q |
101 |
cttcttctagggaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatacctaagaataaatt |
181 |
Q |
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| T |
14610376 |
cttcttctagcgaacatgctaaaggtgaccattctggaatacttcaggtattttcttgtgtattatatctaagaataaatt |
14610456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 211 - 372
Target Start/End: Original strand, 14610517 - 14610678
Alignment:
| Q |
211 |
tatatatcataatttaaatgcatgcatgtatataaataggttatgttgaagccgcccagtcccgatccattaatgggaagtgcagacgacaagatcatag |
310 |
Q |
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| T |
14610517 |
tatatatcttaatttaactatatgcgtgtatatgagtaggtgatgctaaagcctccaagtcctgatccattaacgcgaagtgcaaacaacaacatcattg |
14610616 |
T |
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| Q |
311 |
atttctctgaggtagatacacgtttgccgatgttagtatatgtatctcgagagaagaggcca |
372 |
Q |
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| T |
14610617 |
atttcagtgacgtagatacacgtttgccgatgttggtttatgtatctcgagagaagaggcca |
14610678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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