View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17913_low_11 (Length: 315)
Name: NF17913_low_11
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 7318552 - 7318271
Alignment:
| Q |
17 |
tgtaacagcggatgatttcgtgtactctagcttagcagctgctggaaacacagcaaacccttttaaagttggattaacctctgtaaatgtcagtaattta |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7318552 |
tgtaacagcggatgatttcatgtactctagcttagcagctgctggaaacacagcaaacccttttaaagttggattaacctcggtaaatgtcagtaattta |
7318453 |
T |
|
| Q |
117 |
gcaggtctcaatggacttaagttatctgcagcaagaatagatattggtataaatggaagtgtaccaatgcacactcatcctgatgcaactgaattactaa |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7318452 |
gcaggtctcaatggacataagttatctgcagcaagaatagatattggtataaatggaagtgtaccaatgcacactcatcctgatgcaactgaattactaa |
7318353 |
T |
|
| Q |
217 |
tcgttattcaaggtcaaattactgttggatttatcacacctacaaaactttttgtgaaaattcttaatcctggtgatgtttg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7318352 |
tcgttattcaaggtcaaattactgttggattcatcacacctacaaaacttttggtgaaaattcttaatcctggtgatgtttg |
7318271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 70 - 298
Target Start/End: Original strand, 7324705 - 7324933
Alignment:
| Q |
70 |
caaacccttttaaagttggattaacctctgtaaatgtcagtaatttagcaggtctcaatggacttaagttatctgcagcaagaatagatattggtataaa |
169 |
Q |
| |
|
||||| |||||||||||| ||| ||| ||||||| ||| ||| || ||||||||||||||||| | |||| ||||||||||||| |||| | || |
|
|
| T |
7324705 |
caaactcttttaaagttgcatttaccactgtaaaagtcgataagataccaggtctcaatggacttggtatctctgtagcaagaatagatcttggcttcaa |
7324804 |
T |
|
| Q |
170 |
tggaagtgtaccaatgcacactcatcctgatgcaactgaattactaatcgttattcaaggtcaaattactgttggatttatcacacctacaaaacttttt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||||| ||||||| |||||||||||||| |||| ||||||||||||||||| |||| ||||| |
|
|
| T |
7324805 |
tggaagtgtaccaatgcacactcatcctggtgtaggcgaatttataatcgtcattcaaggtcaaatgactgctggatttatcacacctaaaaaagttttt |
7324904 |
T |
|
| Q |
270 |
gtgaaaattcttaatcctggtgatgtttg |
298 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
7324905 |
atgaaaactcttaatcctggtgatgtttg |
7324933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 293
Target Start/End: Original strand, 7322025 - 7322158
Alignment:
| Q |
160 |
ttggtataaatggaagtgtaccaatgcacactcatcctgatgcaactgaattactaatcgttattcaaggtcaaattactgttggatttatcacacctac |
259 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||||||||||| |||||||| || ||| | || || | ||| | |||| ||||||||| ||||| | |
|
|
| T |
7322025 |
ttggtataaatggaactgttccaatgcactttcatcctgatgcgactgaattgcttatcatagttgaaagccaattaactgctggatttattacaccggc |
7322124 |
T |
|
| Q |
260 |
aaaactttttgtgaaaattcttaatcctggtgat |
293 |
Q |
| |
|
|||| ||| | |||||||| |||| | ||||||| |
|
|
| T |
7322125 |
aaaagtttatttgaaaattgttaaacatggtgat |
7322158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 252
Target Start/End: Original strand, 6521475 - 6521606
Alignment:
| Q |
121 |
gtctcaatggacttaagttatctgcagcaagaatagatattggtataaatggaagtgtaccaatgcacactcatcctgatgcaactgaattactaatcgt |
220 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||| |||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
6521475 |
gtctcaatggacttgatatatctgcagcaagagtagacattggtccaaatggatctgttccaatgcatactcatcctgatgcaactgaattactaatcat |
6521574 |
T |
|
| Q |
221 |
tattcaaggtcaaattactgttggatttatca |
252 |
Q |
| |
|
|||||||| | | |||| ||||||||||| |
|
|
| T |
6521575 |
ggttcaaggtagagtcactgctggatttatca |
6521606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 15337559 - 15337527
Alignment:
| Q |
180 |
ccaatgcacactcatcctgatgcaactgaatta |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
15337559 |
ccaatgcatactcatcctgatgcaactgaatta |
15337527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 19623731 - 19623699
Alignment:
| Q |
180 |
ccaatgcacactcatcctgatgcaactgaatta |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
19623731 |
ccaatgcatactcatcctgatgcaactgaatta |
19623699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 250
Target Start/End: Complemental strand, 2345405 - 2345216
Alignment:
| Q |
58 |
ctggaaacacagcaaacccttttaaagttggattaacctctgtaaatgtcagtaatttagcaggtctcaatggacttaagttatctgcagcaagaataga |
157 |
Q |
| |
|
|||||| |||| |||||||||||| ||| | |||| |||| | ||||| || |||| ||||||| ||||||||| | |||||||||||| ||| |
|
|
| T |
2345405 |
ctggaagcacaataaacccttttaattttgcaataacatctgcatttgtcactagtttaccaggtcttaatggacttggtatctctgcagcaagagcaga |
2345306 |
T |
|
| Q |
158 |
tattggtataaatggaagtgtaccaatgcacactcatcctgatgcaactgaattactaatcgttattcaaggtcaaattactgttggatttat |
250 |
Q |
| |
|
| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||| | ||||||||||||||| |||||||| |
|
|
| T |
2345305 |
ttttggtataaatggaagtgttccagtgcacactca---tgatgcaactgaattacttatcgttgtcgaaggtcaaattactgccggatttat |
2345216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 32984392 - 32984501
Alignment:
| Q |
141 |
tctgcagcaagaatagatattggtataaatggaagtgtaccaatgcacactcatcctgatgcaactgaattactaatcgttattcaaggtcaaattactg |
240 |
Q |
| |
|
||||| |||||| ||||||||||| |||||||| ||| || ||||| |||||||| ||||||||||||||||||||| | |||||||| || |||| | |
|
|
| T |
32984392 |
tctgcggcaagagtagatattggtgtaaatggatctgttccgatgcatactcatcccgatgcaactgaattactaatcatggttcaaggtaaagttacag |
32984491 |
T |
|
| Q |
241 |
ttggatttat |
250 |
Q |
| |
|
||||||||| |
|
|
| T |
32984492 |
ctggatttat |
32984501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University