View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17913_low_13 (Length: 270)
Name: NF17913_low_13
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 13044309 - 13044070
Alignment:
| Q |
18 |
caagaagtacatatgttattttattttccatggtatttagatatttcaatttaaatgggtccaaatcttcacatgttcactcaagtaaatccaaattcca |
117 |
Q |
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| T |
13044309 |
caagaagtacatatgttattttattttccatggtatttagatatttcaatttaaatgggtccaaatcttcacatgttcactcaagtaaatccaaattcca |
13044210 |
T |
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| Q |
118 |
aacaacaaatgcaaggcaaatagctgtattatacgtgacaatactgaaaataattgccaaactatgtgcgttggggttacag---tccttgacttgcaga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13044209 |
aacaacaaatgcaaggcaaatagctgtattatacgtgacaatactgaaaataattgccaaactatgtgcgttggggttacagtactccttgacttgcaga |
13044110 |
T |
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| Q |
215 |
ccttgtctgacaaattctcacacacttatttgctattcat |
254 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
13044109 |
ccttgtcagacaaattctcacacacttatttgctattcat |
13044070 |
T |
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