View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17913_low_14 (Length: 269)
Name: NF17913_low_14
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 124 - 258
Target Start/End: Complemental strand, 41574149 - 41574009
Alignment:
| Q |
124 |
aaaactaataggtctcttttgttttattttattataaacacataggaccaaccccgcaagaaaggaaacagacaaaataaaggcacaacaaaacaaaagt |
223 |
Q |
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| T |
41574149 |
aaaactaataggtctcttttgttttattttattataaacacataggaccaaccccgcaagaaaggaaacagacaaaataaaggcacaacaaaacaaaagt |
41574050 |
T |
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| Q |
224 |
accttctcctcttc------ctcactcacctacctaccttt |
258 |
Q |
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| T |
41574049 |
accttctcctcctctcctcactcactcacctacctaccttt |
41574009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 41574577 - 41574480
Alignment:
| Q |
18 |
acccataacccttcccatggtagcattactactgcattagagtataggtttgttctgtggtgttttgagctgagcttaccttcctcctcctttgcaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
41574577 |
acccataacccttcccatggtagcattactactgcattagagtataggtttgttctgtggtgttttgagccgagcttaccctcctcctcctttgcaac |
41574480 |
T |
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