View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17913_low_17 (Length: 240)
Name: NF17913_low_17
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 43047500 - 43047283
Alignment:
| Q |
1 |
atcgatcgatcaatgtattcataatcaattcattcataggttattcgtgttgtttactttacatctgcgattgattacattatactgcttttgtttttcg |
100 |
Q |
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| T |
43047500 |
atcgatcgatcaatgtattcataatcaattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttcg |
43047401 |
T |
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| Q |
101 |
atttcttgtttttccattccatccatgtacatgcttaatcgcaattctgaatccaatagttcttttatttaccaatcatcgatagttttcaaggagtcga |
200 |
Q |
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| T |
43047400 |
atttcttgtttttccattccatccatgtacatgcttaatcgcaattctgaatccaatagttcttttatttactaatcatcg-tagttttcaaggagttga |
43047302 |
T |
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| Q |
201 |
tggttttctatactcatac |
219 |
Q |
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||||||||||||||||||| |
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| T |
43047301 |
tggttttctatactcatac |
43047283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 43065409 - 43065516
Alignment:
| Q |
1 |
atcgatcgatcaatgtattcata-----atcaattcattcataggttattcgtgttgtttactttacatctgcgattgattacattatactgcttttgtt |
95 |
Q |
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|||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43065409 |
atcgatcgatcaatgtattcttatcatcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtt |
43065508 |
T |
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| Q |
96 |
tttcgatt |
103 |
Q |
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|||||||| |
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| T |
43065509 |
tttcgatt |
43065516 |
T |
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