View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17913_low_18 (Length: 240)
Name: NF17913_low_18
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17913_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 51892249 - 51892483
Alignment:
| Q |
1 |
ttaatggcgtcattccgacggacgttatctccggcgtatcacgaccgtcactatataaacggcggtggtaccgccttttcaccgtcgtctccatctcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51892249 |
ttaatggcgtcattccgacggacgttatctccggcgtatcacgaccgtcactatataaacggcgatggtaccgccttttcaccgtcgtctccatctcaca |
51892348 |
T |
|
| Q |
101 |
aacttccatcttcaaacacaaactactctgcaatagcgtcttcgtttcagagattaatcggtggcgttttcatgcgacgctacaatcgaaagggacaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51892349 |
aacttccatcttcaaacacaaactactctgcaatagcgtcgtcgtttcagagattaatcggtggcgttttcatgcgacgctacaatcgaaagggacaatg |
51892448 |
T |
|
| Q |
201 |
gcgaaaagttgctttcaggtgcgtcctttgcttct |
235 |
Q |
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|||||||||||||||||||||||| ||||| |||| |
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| T |
51892449 |
gcgaaaagttgctttcaggtgcgttctttgtttct |
51892483 |
T |
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