View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17913_low_6 (Length: 554)

Name: NF17913_low_6
Description: NF17913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17913_low_6
NF17913_low_6
[»] chr2 (14 HSPs)
chr2 (14-188)||(27644997-27645166)
chr2 (250-411)||(27645227-27645389)
chr2 (14-103)||(27549545-27549634)
chr2 (462-540)||(27645474-27645552)
chr2 (339-411)||(27645499-27645572)
chr2 (434-492)||(27645419-27645476)
chr2 (343-411)||(27554426-27554495)
chr2 (449-540)||(27554446-27554536)
chr2 (344-411)||(27554734-27554802)
chr2 (434-540)||(27554602-27554704)
chr2 (450-540)||(27554754-27554840)
chr2 (494-540)||(27554300-27554346)
chr2 (343-411)||(27554582-27554651)
chr2 (479-540)||(27645308-27645369)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 5e-82; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 27644997 - 27645166
Alignment:
Q  14 aaaacagagagaaagaaagaggaatagcgattgagaagaaaagggttaatgagattttggagtgaagaaggtttgtatttatagaccaaaaaggaacggg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27644997 aaaacagagagaaagaaagaggaatagcgattgagaagaaaagggttaatgagattttggagtgaagaaggtttgtatttatagaccaaaaaggaacggg 27645096  T
Q  114 ccacgcggtgtctcttctcttccttaacagagaagattttaaacccctaaattgatgaacaaaattaggatgggt 188  Q
    ||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27645097 ccacgcggtg-----tctcttccttaacagagaagattttaaacccctaaattgatgaacaaaattaggatgggt 27645166  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 250 - 411
Target Start/End: Original strand, 27645227 - 27645389
Alignment:
Q  250 tcagtttatctgtggttaatccaaaatttggtccaaaaatattttttgcgtgtgaattcttaccccttaagatattcctttnnnnnnnngattttcatta 349  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||        |||||| |||     
T  27645227 tcagtttatctgtggttaattcaaaattcggttcaaaaatattttttgcgtgtgaattcttaccccttaaaatatttctttaaaaaaaagatttttattg 27645326  T
Q  350 aatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 411  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27645327 aatgaaaaattaccatatacattatgaatacctttcgtatgattttgttcaaaggaggaaaag 27645389  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 27549545 - 27549634
Alignment:
Q  14 aaaacagagagaaagaaagaggaatagcgattgagaagaaaagggttaatgagattttggagtgaagaaggtttgtatttatagaccaaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  27549545 aaaacagagagaaagaaagaggaatagcgattgagaagaaaagggttaatgagattttggggtgaagaaggtttgtctttatagaccaaa 27549634  T

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Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 462 - 540
Target Start/End: Original strand, 27645474 - 27645552
Alignment:
Q  462 tttatttaatgatagtaaaaaagaagattttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 540  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27645474 tttatttaatgatagtaaaaaagatgattttcattaaatgaaaaattaccatatacatttcgaataccttttgtatgat 27645552  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 27645499 - 27645572
Alignment:
Q  339 gattttcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 411  Q
    |||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  27645499 gattttcattaaatgaaaaattaccatatacatttcgaataccttttgtatgattttgttcaaaggaggaaaag 27645572  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 434 - 492
Target Start/End: Original strand, 27645419 - 27645476
Alignment:
Q  434 gtgtgtgaattctttactccttaagatatttatttaatgatagtaaaaaagaagatttt 492  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  27645419 gtgtgtgaattctt-actctttaagatatttatttaatgatagtaaaaaagaagatttt 27645476  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 27554495 - 27554426
Alignment:
Q  343 ttcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 411  Q
    ||||||||||||||||||| |||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  27554495 ttcattaaatgaaaaattaacatatacatttggaataccttttgtatgattttgttcaaaggaggaaaag 27554426  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 449 - 540
Target Start/End: Complemental strand, 27554536 - 27554446
Alignment:
Q  449 actccttaagatatttatttaatgatagtaaaaaagaagattttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 540  Q
    ||||| |||| ||||  |||||||||||||||||| || | || |||||||||||||| || ||||||||||| ||||||||||||||||||    
T  27554536 actccataaggtattcctttaatgatagtaaaaaaaaaaaatt-cattaaatgaaaaattaacatatacatttggaataccttttgtatgat 27554446  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 411
Target Start/End: Complemental strand, 27554802 - 27554734
Alignment:
Q  344 tcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 411  Q
    ||||||||| |||||||| |||| |||||| |||||| ||| |||||||||||||||||||||||||||    
T  27554802 tcattaaataaaaaattatcatatacattacgaatactttttgtatgattttgttcaaaggaggaaaag 27554734  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 540
Target Start/End: Complemental strand, 27554704 - 27554602
Alignment:
Q  434 gtgtgtgaattctttactccttaagatatttatttaatgatagtaaaaaagaagattttcattaaatgaaaaactaccatatacatttcgaatacctttt 533  Q
    ||||||||| |||| ||||| |||| ||||  ||||||||||||||||| ||| |||  |||||||||||||| || |||||  ||||||||||||||||    
T  27554704 gtgtgtgaactctt-actccataaggtattcctttaatgatagtaaaaa-gaaaatt--cattaaatgaaaaattatcatatttatttcgaatacctttt 27554609  T
Q  534 gtatgat 540  Q
    |||||||    
T  27554608 gtatgat 27554602  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 540
Target Start/End: Complemental strand, 27554840 - 27554754
Alignment:
Q  450 ctccttaagatatttatttaatgatagtaaaaaagaagattttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 540  Q
    ||||||||||||||  |||||||||||||||||| ||     ||||||||| ||||| || |||||||||| ||||||| |||||||||||    
T  27554840 ctccttaagatattcctttaatgatagtaaaaaaaaaa----tcattaaataaaaaattatcatatacattacgaatactttttgtatgat 27554754  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 540
Target Start/End: Complemental strand, 27554346 - 27554300
Alignment:
Q  494 attaaatgaaaaactaccatatacatttcgaataccttttgtatgat 540  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  27554346 attaaatgaaaaattaccaaatacatttcaaataccttttgtatgat 27554300  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 27554651 - 27554582
Alignment:
Q  343 ttcattaaatgaaaaattaccataac-attatgaatacctttcgtatgattttgttcaaaggaggaaaag 411  Q
    ||||||||||||||||||| ||||   |||  |||||||||| ||||||||||||| |||||||||||||    
T  27554651 ttcattaaatgaaaaattatcatatttatttcgaataccttttgtatgattttgtttaaaggaggaaaag 27554582  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 27645308 - 27645369
Alignment:
Q  479 aaaaagaagattttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 540  Q
    ||||| |||||||| ||| ||||||||| |||||||||||||  |||||||||| |||||||    
T  27645308 aaaaaaaagatttttattgaatgaaaaattaccatatacattatgaatacctttcgtatgat 27645369  T

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