View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17914_high_2 (Length: 383)
Name: NF17914_high_2
Description: NF17914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17914_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 34693759 - 34693571
Alignment:
| Q |
1 |
catgcagaccattttgatggttggagttggacgaatttgtcgattttttgaacttgtttgaccaatgtactttcttgaagggagccatcactgatcgatg |
100 |
Q |
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| T |
34693759 |
catgcagaccattttgatggttggagttcgaggaatttgtcgattttttgaacttgtttgaccaatgtactttcttgaagggagccatcactgatcgatt |
34693660 |
T |
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| Q |
101 |
gttgatatgctgggatagatggagaaattaagacgaattattgaacttgaacctgaatattgaaagatatagacgattattagagagaa |
189 |
Q |
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| T |
34693659 |
gttgatatgctgggatagatggagaaattaagacgaattattgaacttgaacctgaatattgaaagatatagatgattattagagagaa |
34693571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 224 - 368
Target Start/End: Complemental strand, 34693576 - 34693436
Alignment:
| Q |
224 |
agagaaacaaacaaaaataaagaacatgaaccatgaatttgctaaacgctgtgtatatatagttgcagcttttacttacttacactgaagaaaactgctt |
323 |
Q |
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| T |
34693576 |
agagaaacaaacaaaaataaagaacatgaaccatgaatttgctaaacgctgtgtatatatagttgcagcttttac----ttacaccgaagaaaactgctt |
34693481 |
T |
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| Q |
324 |
gtttttcacgcaagtgtgtgtgcttgatcaatggaagagaaggag |
368 |
Q |
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| T |
34693480 |
gtttttcacgcaagtgtgtgtgcttgatcaatggaagagaaggag |
34693436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 34685965 - 34685775
Alignment:
| Q |
1 |
catgcagaccattttgatggttggagttggacgaatttgtcgattttttgaacttgtttgaccaatgtactttcttgaagggagccatcactgatcgatg |
100 |
Q |
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| T |
34685965 |
catgcagacgattttgatggttggagttcgacgaactggtcgacttaatgaacctgcttggccaatgtactttcttcctgggagccatcactgatcgatc |
34685866 |
T |
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| Q |
101 |
gttgatatgctgggatagatggagaaattaagacgaattattgaacttgaacctgaatattgaaagatatagacgattattagagagaagta |
192 |
Q |
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| T |
34685865 |
gttgatatgctgcgatagatagagaaagtaagggaaattattgaactt-aacctaaatatcaaaagatagagatgattattagagataagta |
34685775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 34693108 - 34693051
Alignment:
| Q |
311 |
aagaaaactgcttgtttttcacgcaagtgtgtgt---gcttgatcaatggaagagaag |
365 |
Q |
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| T |
34693108 |
aagaaaactgcttatttttcacgcaagtatgtgtgtagcatgatcaatggaagagaag |
34693051 |
T |
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