View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17914_low_2 (Length: 389)
Name: NF17914_low_2
Description: NF17914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17914_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 6 - 374
Target Start/End: Complemental strand, 10316421 - 10316053
Alignment:
| Q |
6 |
caaaggtcacatgtactcatctattaaagagtttgttattctaaagtattgaagtgtttagtgccatgatcctcctctaagcaagtacattatattggtt |
105 |
Q |
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| T |
10316421 |
caaaggtcacatgtactcatctattaaagagtttgttattctaaagtattgaagtgtttagtgccatgatcctcctctaagcaagtacattatattggtt |
10316322 |
T |
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| Q |
106 |
aattcccttagtttattggataaaatgcaacgttaatagtgcatctaaaggctctcatgggtttctacttatggatgcatttttggaagtcatactggag |
205 |
Q |
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| T |
10316321 |
aattcccttagtttattggataaaatgcaacgttaatagtgcatctaaaggctctcatgggtttctacttatggatgcatttttggaagtcatactggag |
10316222 |
T |
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| Q |
206 |
cttttattagtgttttctctactaatatttatatcgctaattctcttcatgatgaaattagagcttccatttattctactgaaattgctcattctagaga |
305 |
Q |
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| T |
10316221 |
cttttattagtgttttctctactaatatttatatcgctaattctcttcatgatgaaattagagcttccatttattctactgaaattgctcattctataga |
10316122 |
T |
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| Q |
306 |
ttggaacaattcatagcttgaaagtgattctttgttaactatttaagatttctctaacattaatattgt |
374 |
Q |
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| T |
10316121 |
ttggaacaattcatggcttgaaagtgattctttgttaactatttaagatttctctaacattaatattgt |
10316053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 23122017 - 23122089
Alignment:
| Q |
6 |
caaaggtcacatgtactcatctattaaagagtttgttattctaaagtattgaagtgtttagtgccatgatcct |
78 |
Q |
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| T |
23122017 |
caaaggtcaaatgtactcatctattaaagaatttgctatcttgaagtattttagtgtttagtgacatgctcct |
23122089 |
T |
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