View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17914_low_4 (Length: 340)
Name: NF17914_low_4
Description: NF17914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17914_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 44917725 - 44917402
Alignment:
| Q |
1 |
aatttggtgttctagttcatctcaatccaatgatattgaaaacaaatgttcaaattataatggtttaggtaatgatatgcaaaatggtttaggtagctaa |
100 |
Q |
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| T |
44917725 |
aatttggtgttctagttcatctcaatccaatgatattgaaaacaaatgttcaaattataatggtttaggtaatgatatgcaaaatggtttaggtagctaa |
44917626 |
T |
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| Q |
101 |
caacttttgatttaaacatgatgaaaacattcaatttaaaaggaaaaataatgtagtgatttgatctctcatatctcataataaagaacaaaaatcttaa |
200 |
Q |
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| T |
44917625 |
caacttttgatttaaacatgatgaaa-cattcaatttaaaaggaaaaataatgtagtgatttgatctctcatatctcataataaagaacaaaaatcttaa |
44917527 |
T |
|
| Q |
201 |
attctctctgattaagttaaaaacatcacataatgttgtcaaggatcatattttttactgcagtttctctagcaacaatagcagtgattgttttagcttt |
300 |
Q |
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| T |
44917526 |
attctctctgattaagttaaaaacatcacataatgttgtcaaggatcatattttttactgcagtttctctagcaacaatagcagtgattgttttagcttt |
44917427 |
T |
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| Q |
301 |
ggtatcacctgtttcacataaaaag |
325 |
Q |
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| T |
44917426 |
ggtatcacctgtttcacataaaaag |
44917402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 325
Target Start/End: Complemental strand, 44903958 - 44903930
Alignment:
| Q |
297 |
ctttggtatcacctgtttcacataaaaag |
325 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44903958 |
ctttggtatcacctgtttcacataaaaag |
44903930 |
T |
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