View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17914_low_5 (Length: 230)
Name: NF17914_low_5
Description: NF17914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17914_low_5 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 207400 - 207237
Alignment:
| Q |
48 |
tcttttccgtgctattattatgcaaatccaaaaacaacacaccacccaagccgacacttacctagatccacaaaaacgattatcttgttgatgttagtct |
147 |
Q |
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| T |
207400 |
tcttttccgtgctattattatgcaaatccaaaaacaacacacgacccaagccgacacttacctagatccacaaaaatgattatcttgttgatgttactct |
207301 |
T |
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| Q |
148 |
tgaatatttcgcaaatgatgacaagctagatagggacatcatatcaccattgaaaaaacgaaga |
211 |
Q |
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| T |
207300 |
tgaatatttctcaaatgatgacaaaatagatagggacatcatatctccattaaaaaaacgaaga |
207237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 48 - 211
Target Start/End: Original strand, 21962337 - 21962500
Alignment:
| Q |
48 |
tcttttccgtgctattattatgcaaatccaaaaacaacacaccacccaagccgacacttacctagatccacaaaaacgattatcttgttgatgttagtct |
147 |
Q |
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| T |
21962337 |
tcttttccgtgctattattatgcaaatccaaaaacaacacacgacccaagccgacacttacctagatccacaaaaatgattatcttgttgatgttactct |
21962436 |
T |
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| Q |
148 |
tgaatatttcgcaaatgatgacaagctagatagggacatcatatcaccattgaaaaaacgaaga |
211 |
Q |
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| T |
21962437 |
tgaatatttctcaaatgatgacaaaatagatagggacatcatatctccattaaaaaaacgaaga |
21962500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 39324441 - 39324396
Alignment:
| Q |
132 |
ttgttgatgttagtcttgaatatttcgcaaatgatgacaagctaga |
177 |
Q |
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| T |
39324441 |
ttgttgttgttactctcgaatatttcgcaaatgatgacaaactaga |
39324396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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