View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17914_low_6 (Length: 207)
Name: NF17914_low_6
Description: NF17914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17914_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 8256365 - 8256500
Alignment:
| Q |
62 |
aaaaataagagagtatatcaagtatttatacatacttgatattatatttctaactaacacttaccatcttataattgtactacaccattgtgacttttgc |
161 |
Q |
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| T |
8256365 |
aaaaataagagagtatatcaagtatttatacatagttgatattatacttctaactaacacgtaccatcttataactgtactacaccattgtgacttgtgc |
8256464 |
T |
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| Q |
162 |
tacaagttactactattaaccatctcatttcctttg |
197 |
Q |
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| T |
8256465 |
tacaagttacttctattaaccatctcatttcctttg |
8256500 |
T |
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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 8261402 - 8261452
Alignment:
| Q |
127 |
atcttataattgtactacaccattgtgacttttgctacaagttactactat |
177 |
Q |
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|||||| ||||||||||||| |||||||||| | ||||||||||||||||| |
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| T |
8261402 |
atcttagaattgtactacactattgtgacttgtactacaagttactactat |
8261452 |
T |
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