View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_high_15 (Length: 303)
Name: NF17915_high_15
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 35021872 - 35022146
Alignment:
| Q |
20 |
ccttctacccacgcgccaaaatcaccaccatctccgtcggtaacgccttcaccgacgtttaccctgaatccatcaacaacctccttcccgccatctccaa |
119 |
Q |
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| T |
35021872 |
ccttctacccacgcgccaaaatcaccaccatctccgtcggtaacgccttcaccgacgtttaccctgaatccatcaacaacctccttcccgccatctccaa |
35021971 |
T |
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| Q |
120 |
cgttcacatctcccttcgcgacctcggcattcgtaaaatctccgtttcaacttccttctccttcgtcaccgccgtaacttccccttttccaccttcctcc |
219 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35021972 |
cgttcacatctcccttcgcgacctcggtattcgtaaaatctccgtttcaacttccttctccttcgtcaccgccgtaacttccccttttccaccttcctcc |
35022071 |
T |
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| Q |
220 |
gcctcgtttcaagaaattcccggcgttaacctgatcggtccacttctccaattcctctccgatactaattcatct |
294 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35022072 |
gccgcgtttcaagaaattcccggcgttaacctgatcggtccacttctccaattcctctccgatactaattcatct |
35022146 |
T |
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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 42811575 - 42811487
Alignment:
| Q |
72 |
cgacgtttaccctgaatccatcaacaacctccttcccgccatctccaacgttcacatctcccttcgcgacctcggcattcgtaaaatct |
160 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |
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| T |
42811575 |
cgacgtttaccctgaatccatcaacaacctcctccccgccatctccaacgttcacatctcccttcacgacctcggcatccataaaatct |
42811487 |
T |
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