View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17915_high_19 (Length: 247)

Name: NF17915_high_19
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17915_high_19
NF17915_high_19
[»] chr1 (3 HSPs)
chr1 (13-229)||(6180720-6180936)
chr1 (32-229)||(6210935-6211132)
chr1 (32-229)||(6216788-6216985)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 6180720 - 6180936
Alignment:
Q  13 aaaatgtatctattgattaattacctccatttaaccatagaataagaggctttgtggaagaatttagaggtgattctacaaagtagtagaaaagttctct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6180720 aaaatgtatctattgattaattacctccatttaaccatagaataagaggctttgtggaagaatttagagatgattctacaaagtagtagaaaagttctct 6180819  T
Q  113 ccctccttttgaatcaacagttacatagccagcatattgatcaaaatccaccccttttggttgtccaggcaaagccttcaccttatcatcttccatcaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6180820 ccctccttttgaatcaacagttacatagccagcatattgatcaaaatccaccccttttggttgtccaggcaaagccttcaccttatcatcttccatcaac 6180919  T
Q  213 cttaattgttgttcaac 229  Q
    |||||||||||||||||    
T  6180920 cttaattgttgttcaac 6180936  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 6210935 - 6211132
Alignment:
Q  32 attacctccatttaaccatagaataagaggctttgtggaagaatttagaggtgattctacaaagtagtagaaaagttctctccctccttttgaatcaaca 131  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||  ||| ||||| ||||||||||||||||||| |||||   |||| | ||| |||    
T  6210935 attacctccatttagccatagaacgagaggctttgtggaagaatttgaaggagattcaacaaagtagtagaaaagttttctcctagctttggcatccaca 6211034  T
Q  132 gttacatagccagcatattgatcaaaatccaccccttttggttgtccaggcaaagccttcaccttatcatcttccatcaaccttaattgttgttcaac 229  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||| | ||| | || ||||||| |||||||||||    
T  6211035 gttatatagccagcatattgatcaaaattcaccccttttggttgtccaggcaaactcttcaccttataagctttcctcgaccttaaatgttgttcaac 6211132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 6216788 - 6216985
Alignment:
Q  32 attacctccatttaaccatagaataagaggctttgtggaagaatttagaggtgattctacaaagtagtagaaaagttctctccctccttttgaatcaaca 131  Q
    |||||||||||||| |||||||| ||||||||| ||||||||||||  ||| ||||| ||||||||||||||||||| |||||   |||| | ||| |||    
T  6216788 attacctccatttagccatagaacaagaggcttcgtggaagaatttgaaggagattcaacaaagtagtagaaaagttttctcctagctttggcatccaca 6216887  T
Q  132 gttacatagccagcatattgatcaaaatccaccccttttggttgtccaggcaaagccttcaccttatcatcttccatcaaccttaattgttgttcaac 229  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||  || | || ||||||| |||||||||||    
T  6216888 gttatatagccagcatattgatcaaaattcaccccttttggttgtccaggcaaactcttcaccttatcagatttcctcgaccttaagtgttgttcaac 6216985  T

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