View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_high_20 (Length: 246)
Name: NF17915_high_20
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4354164 - 4353930
Alignment:
| Q |
1 |
ttagggtatgagactgttcagatgtcaatgtaatcaaacttttaaactattctcatgtaatcgactttccttactaatgcttctacacctgcattctttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
4354164 |
ttagggtatgagactgttcagatgtcaatgtaatcaaacttttaaactattctcatgtaatcgactttccttactgatgcttctacacctgtattctttg |
4354065 |
T |
|
| Q |
101 |
cacatgctacaacaaaaaatatcttaatatgttc-------taatgattcta-ttctaatctcatattgtataatcattcattccatgtatgtaacatta |
192 |
Q |
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|
|||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4354064 |
cacatgctacaacaaaaaatatcttaatatgttcttatgagttatgattctatttctaatctcatattgtataatcattcattccatgtatgtaacatta |
4353965 |
T |
|
| Q |
193 |
caatctcagcaacactcgatttactttgtcgctag |
227 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
4353964 |
caatctcagcaacactcgatttactttgtcgctag |
4353930 |
T |
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