View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_high_23 (Length: 238)
Name: NF17915_high_23
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 17645166 - 17645384
Alignment:
| Q |
16 |
caccaataaccaacttgtgaatggtttcccttcctcaccaaaatatcaggaaaatgtcacaaggttgcagaagattcggcctccaccattgtccactgtg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17645166 |
caccaataaccaacttgtgaatggtttcccttcctcaccaaaatatcaggaaaatgtcacaaggttgcagaagattcggcctccaccattgtccactgtg |
17645265 |
T |
|
| Q |
116 |
aggataccaatttcggttaaggttccggctccagtacctccttcacaagctccatacaatgcgctgctaggacattatgtgcaacctattactcgtcctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17645266 |
aggataccaatttcggttaaggttccggctccagtacctccttcacaagctccatacaatgcgctgctaggacatcatgtgcaacctattactcgtcctt |
17645365 |
T |
|
| Q |
216 |
ctattgtttacaactcaca |
234 |
Q |
| |
|
|| |||||||||| ||||| |
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|
| T |
17645366 |
ctcttgtttacaattcaca |
17645384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 17605088 - 17605307
Alignment:
| Q |
19 |
caataaccaacttgtgaatggtttcccttcctcaccaaaatatcaggaaaatgtcacaaggttgcagaagattcggcctccaccattgtccactgtgagg |
118 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
17605088 |
caataaccaacttgtgaatggtttctcttccacaccaaaatctcaggaaatggttacaaggttgcagaagattcggcctccaccattgtccattgtaagg |
17605187 |
T |
|
| Q |
119 |
ataccaatttcggttaaggttccggctccagtacctccttcacaagctccatacaatgcgctgctaggacattatgtgcaacctattactcgtccttcta |
218 |
Q |
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||| ||| |||||| |||| | |||||||||||||||||||||||||||||| | || ||||||||| ||||| ||||||||| | ||| ||| |
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| T |
17605188 |
caaccgattccggttatggtttcaaaaccagtacctccttcacaagctccatacaatacacttctaggacatcatgtggaacctattaattttccaccta |
17605287 |
T |
|
| Q |
219 |
ttgtttacaactcacaaaat |
238 |
Q |
| |
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|||||||||| ||| ||||| |
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| T |
17605288 |
ttgtttacaattcagaaaat |
17605307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 16481112 - 16480903
Alignment:
| Q |
19 |
caataaccaacttgtgaatggtttcccttcctcaccaaaatatcaggaaaatgtcacaaggttgcagaagattcggcctccaccattgtccactgtgagg |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||| ||||| ||| ||| | || ||||||||||| || || ||||||||||||||||||| ||| ||| |
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| T |
16481112 |
caataaccaacttgtgaatggttttccttacacacgaaaatctcaagaagaggttacaaggttgcaaaatatgcggcctccaccattgtccattgtaagg |
16481013 |
T |
|
| Q |
119 |
ataccaatttcggttaaggttccggctccagtacctccttcacaagctccatacaatgcgctgctaggacattatgtgcaacctattactcgtccttcta |
218 |
Q |
| |
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||||||| |||| | |||| || | || |||||| |||||||||||||||||| | | ||||| || |||||||| |||||| | ||||| ||| |
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| T |
16481012 |
ccaccaattccggtcatggtttcgacagcaatacctcactcacaagctccatacaatacaattctagggaatcatgtgcaatctattaattgtcctccta |
16480913 |
T |
|
| Q |
219 |
ttgtttacaa |
228 |
Q |
| |
|
||||||||| |
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|
| T |
16480912 |
ctgtttacaa |
16480903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 17631671 - 17631890
Alignment:
| Q |
19 |
caataaccaacttgtgaatggtttcccttcctcaccaaaatatcaggaaaatgtcacaaggttgcagaagattcggcctccaccattgtccactgtgagg |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||| | |||||| | || |||||| | ||||||||||| ||| |||||||||| |||||||||| ||| ||| |
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| T |
17631671 |
caataaccaacttgtgaatgggttcccttacataccaaagtctcgggaaaagcttacaaggttgcaaaaggttcggcctccgccattgtccattgtaagg |
17631770 |
T |
|
| Q |
119 |
ataccaatttcggttaaggttccggctccagtacctccttcacaagctccatacaatgcgctgctaggacattatgtgcaacctattactcgtccttcta |
218 |
Q |
| |
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| ||||| | || |||| || | ||| |||||||||||||||||||| ||||| | || ||| || || |||||||| || ||| | ||||| ||| |
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| T |
17631771 |
ccatcaattccagtcgtggtttcgacaccactacctccttcacaagctccaaacaatacacttctaagaaatcatgtgcaatctgttaatagtcctccta |
17631870 |
T |
|
| Q |
219 |
ttgtttacaactcacaaaat |
238 |
Q |
| |
|
|||||| ||||||| |||| |
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|
| T |
17631871 |
atgtttataactcaccaaat |
17631890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 20751730 - 20751644
Alignment:
| Q |
74 |
acaaggttgcagaagattcggcctccaccattgtccactgtgaggataccaatttcggttaaggttccggctccagtacctccttca |
160 |
Q |
| |
|
|||||||||||||| | ||| |||||||| ||||||| ||||||| ||||||||| ||| ||||||||| |||| ||||||||||| |
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| T |
20751730 |
acaaggttgcagaaaaatcgacctccacctttgtccattgtgaggccaccaatttcagttcaggttccggatccattacctccttca |
20751644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 17950357 - 17950313
Alignment:
| Q |
74 |
acaaggttgcagaagattcggcctccaccattgtccactgtgagg |
118 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
17950357 |
acaaggttgcagaagaatcgacctccaccattgtccattgtgagg |
17950313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 17954209 - 17954165
Alignment:
| Q |
74 |
acaaggttgcagaagattcggcctccaccattgtccactgtgagg |
118 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
17954209 |
acaaggttgcagaagaatcgacctccaccattgtccattgtgagg |
17954165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 18766800 - 18766839
Alignment:
| Q |
19 |
caataaccaacttgtgaatggtttcccttcctcaccaaaa |
58 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
18766800 |
caataaccaacttttgaatggtttcccttcctcacaaaaa |
18766839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 17676708 - 17676643
Alignment:
| Q |
52 |
accaaaatatcaggaaaatgtcacaaggttgcagaagattcggcctccaccattgtccactgtgag |
117 |
Q |
| |
|
|||||||| ||||| || || |||||||| ||||||| ||| |||||||||||||||| |||||| |
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|
| T |
17676708 |
accaaaatctcaggctaaggttacaaggttacagaagaatcgacctccaccattgtccattgtgag |
17676643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 17649664 - 17649708
Alignment:
| Q |
74 |
acaaggttgcagaagattcggcctccaccattgtccactgtgagg |
118 |
Q |
| |
|
|||||||| ||||||| ||| |||||||||||||||| ||||||| |
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|
| T |
17649664 |
acaaggttacagaagaatcgacctccaccattgtccattgtgagg |
17649708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 17664003 - 17663975
Alignment:
| Q |
19 |
caataaccaacttgtgaatggtttccctt |
47 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
17664003 |
caataaccaacttgtgaatggtttccctt |
17663975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 32669674 - 32669717
Alignment:
| Q |
74 |
acaaggttgcagaagattcggcctccaccattgtccactgtgag |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
32669674 |
acaaggttgcagaagaatcggcctccaccattgtccattgtgag |
32669717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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