View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17915_high_25 (Length: 235)

Name: NF17915_high_25
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17915_high_25
NF17915_high_25
[»] chr2 (4 HSPs)
chr2 (1-221)||(10031492-10031716)
chr2 (1-221)||(10053405-10053629)
chr2 (56-191)||(10074304-10074439)
chr2 (63-171)||(10063699-10063807)
[»] chr5 (1 HSPs)
chr5 (192-221)||(12534362-12534391)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10031492 - 10031716
Alignment:
Q  1 taaataatatttaccattgttgatttgagatctgaaagccgagatcaataacagtgtcacacattaactgcatggaatccaaagcctagttcatatgctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10031492 taaataatatttaccattgttgatttgagatctgaaagccgagatcaataacagtgtcacacattaactgcatggaatccaaagcctagttcatatgctt 10031591  T
Q  101 gtcgtaagttc----ctaactttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatatagacagagaacaggtaatttgtaat 196  Q
    |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10031592 gtcgtaagttcctaactaactttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatatagacagagaacaggtaatttgtaat 10031691  T
Q  197 ttaatttctttttatatgatgttga 221  Q
    |||||||||||||||||||||||||    
T  10031692 ttaatttctttttatatgatgttga 10031716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10053405 - 10053629
Alignment:
Q  1 taaataatatttaccattgttgatttgagatctgaaagccgagatcaataacagtgtcacacattaactgcatggaatccaaagcctagttcatatgctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10053405 taaataatatttaccattgttgatttgagatctgaaagccgagatcaataacagtgtcacacattaactgcatggaatccaaagcctagttcatatgctt 10053504  T
Q  101 gtcgtaagttcc----taactttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatatagacagagaacaggtaatttgtaat 196  Q
    ||||| ||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10053505 gtcgttagttcctaattaactttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatatagacagagaacgggtaatttgtaat 10053604  T
Q  197 ttaatttctttttatatgatgttga 221  Q
    |||||||||||||||||||||||||    
T  10053605 ttaatttctttttatatgatgttga 10053629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 10074304 - 10074439
Alignment:
Q  56 gtcacacattaactgcatggaatccaaagcctagttcatatgcttgtcgtaagttcctaactttcccttattacagttttattcagactgtatgatctta 155  Q
    ||||| || |||| || ||||||||| | |||| ||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |    
T  10074304 gtcacgcagtaaccgcgtggaatccagatcctaattcatatgcttgttgtgatttcctaactttcccttattacagttttattcagactgtatgatctca 10074403  T
Q  156 aacagcaaggatatatagacagagaacaggtaattt 191  Q
    |||||||||||||||| |||||||||||||||||||    
T  10074404 aacagcaaggatatattgacagagaacaggtaattt 10074439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 10063699 - 10063807
Alignment:
Q  63 attaactgcatggaatccaaagcctagttcatatgcttgtcgtaagttcctaactttcccttattacagttttattcagactgtatgatcttaaacagca 162  Q
    ||||||||| ||||||||||| |||| |||||||| |||| || |  |||||||||||| |||||||||||||||||||| |||||||||| ||||||||    
T  10063699 attaactgcgtggaatccaaatcctaattcatatggttgttgtgatctcctaactttcctttattacagttttattcagagtgtatgatctcaaacagca 10063798  T
Q  163 aggatatat 171  Q
    |||||||||    
T  10063799 aggatatat 10063807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 12534362 - 12534391
Alignment:
Q  192 gtaatttaatttctttttatatgatgttga 221  Q
    ||||||||||||||||||||||||||||||    
T  12534362 gtaatttaatttctttttatatgatgttga 12534391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University