View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_high_6 (Length: 471)
Name: NF17915_high_6
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Complemental strand, 44279934 - 44279489
Alignment:
| Q |
16 |
aaaaccacccaaacccgccgtaacaaccagatccgaacccgaccacttcgtaacccaaatcattacccaaccagctcctcctccctccccgtcgatgcca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44279934 |
aaaaccacccaaacccgccgtaacaaccagatccgaacccgaccacttcgtaacccaaatcattacccaaccagctcctcctccctccccgtcgatgcca |
44279835 |
T |
|
| Q |
116 |
gctggtcatgggatccaaatctcaaaatctccatggaagaactctcacgcgctacaaaaaatttctccaataccctcatcgttggcgatggtagcttcgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
44279834 |
gctggtcatgggatccaaatctcaaaatctccatggaagaactctcacgcgctacaaaaaatttctccaacaccctcatcgtcggcgatggtagcttcgg |
44279735 |
T |
|
| Q |
216 |
ctatgtttacaaagctagtctctccaccggcgctaccgtcgccgtcaaaaaactctcccctgacgcttttcaaggcttccgtgaattcgcagcggagatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44279734 |
ctatgtttacaaagctagtctctccaccggcgctaccgtcgccgtcaaaaaactctcccctgacgcttttcaaggcttccgtgaattcgcagcggagatg |
44279635 |
T |
|
| Q |
316 |
gaaacgctaagcaaactccgccaccacaacatcgtgaaaatcctcggttattgggcttctggagctgaacggttactcgtttacgagttcattgaaaaag |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44279634 |
gaaacgctaagcaaactccgccaccacaacatcgtgaaaatcctcggttattgggcttctggagctgaacggttactcgtttacgagttcattgaaaaag |
44279535 |
T |
|
| Q |
416 |
gaaacctcgatcaatggcttcatgaatcatctccaacctcttcttc |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44279534 |
gaaacctcgatcaatggcttcatgaatcatctccaacctcttcttc |
44279489 |
T |
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