View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_high_7 (Length: 467)
Name: NF17915_high_7
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Original strand, 42723521 - 42723956
Alignment:
| Q |
16 |
tattgaatatgagagaatgatcatgaattagaaatgtatacaagagattataatgtnnnnnnnnnncctgcatggtatgacaagggatgatgatgagtag |
115 |
Q |
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| T |
42723521 |
tattgaatatgagagaatgatcatgaattagaaatgtatacaagagattataatgtaaaaaaa---cctgcatggtatgacaagggatgatgatgagtag |
42723617 |
T |
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| Q |
116 |
gataaggatgcgcaggatagagttctctggaccaccccataggaacattgccgtgagtactactactagagatggatctactaacatgagccggtggagt |
215 |
Q |
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| T |
42723618 |
gataaggatgcgcaggatagagttctctggaccaccccataggaacattgccgtgagtactactactagagatggatctgctaacatgagccggtggagt |
42723717 |
T |
|
| Q |
216 |
agagttactaccatggcggcgcctccatgagataaacaacctttgaggatgtatacggtgtctttgaaacaaaacaacatcaccagcatcaagacgttta |
315 |
Q |
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| T |
42723718 |
agagttactaccatggcggcgcctccatgagataaacaacctttgaggatgtatacggtgtctttgaaacaaaacaacatcaccagcatcaagacgttta |
42723817 |
T |
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| Q |
316 |
tctttaacataacgactccaaccttttgtaagaacatagctttgactactattccaatacgaataccggaacctccaacacttacctgactcatcctcga |
415 |
Q |
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| T |
42723818 |
tctttaacataacgactccaaccttttgtaagaacatagctttgactactattccaatacgaataccggaacctccaacacttacctgactcatcctcga |
42723917 |
T |
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| Q |
416 |
aactcagtaacaagcctttgatttcttctgagtctagtg |
454 |
Q |
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| T |
42723918 |
aactcagtaacaagcctttgatttcttctgagtctagtg |
42723956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 282 - 425
Target Start/End: Complemental strand, 25691088 - 25690945
Alignment:
| Q |
282 |
aaacaaaacaacatcaccagcatcaagacgtttatctttaacataacgactccaaccttttgtaagaacatagctttgactactattccaatacgaatac |
381 |
Q |
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||||| ||| ||||| |||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| || || |
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| T |
25691088 |
aaacagaacgacatcgccagcatcgagtcgtttatctttgacataacgactccaaccttttgttagaacatagctttgactactgttccaataagagtaa |
25690989 |
T |
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| Q |
382 |
cggaacctccaacacttacctgactcatcctcgaaactcagtaa |
425 |
Q |
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| T |
25690988 |
cggaaacgccaacacttccctgactcatcttcaaaacttagtaa |
25690945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 374
Target Start/End: Original strand, 8774999 - 8775094
Alignment:
| Q |
279 |
ttgaaacaaaacaacatcaccagcatcaagacgtttatctttaacataacgactccaaccttttgtaagaacatagctttgactactattccaata |
374 |
Q |
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||||||| |||||| || ||||||||||| ||| ||||||||| |||| |||||||||||||| | |||||||||||| ||||| |||||||| |
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| T |
8774999 |
ttgaaacgaaacaatgtcgccagcatcaagttttttctctttaacaaaacggctccaaccttttgtcataacatagctttggctactgttccaata |
8775094 |
T |
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