View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_high_8 (Length: 458)
Name: NF17915_high_8
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 3017741 - 3018170
Alignment:
| Q |
18 |
gaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017741 |
gaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagt |
3017840 |
T |
|
| Q |
118 |
gttcttcaaaagtgtgcaacaaagcttataatacctatttgcggcatgctgtgaatatgttgggtactatggttgatgttcttgactcaataatcatgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017841 |
gttcttcaaaagtgtgcaacaaagcttataatacctatttgcggcatgctgtgaatatgttgggtactatggttgatgttcttgactcaataatcatgca |
3017940 |
T |
|
| Q |
218 |
gtgaactttggtgcaaatgatgcatcaatcatgtgggaaacttcggtgcttttggttaagaattttttgtgccaaattagttgtttatctttaaaaatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017941 |
gtgaactttggtgcaaatgatgcatcaatcatgtgggaaatttcggtgcttttggttaagaattttttgtgccaaattagttgtttatctttaaaaatat |
3018040 |
T |
|
| Q |
318 |
tttctagttaagaccaaacttcatatatgta----tgtttatagatattgccaaatttctttgcttgattattctaaaaggtaagtttcatatgcaattc |
413 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018041 |
tttctagttaagaccaaacttcatatatgtatgtttgtttatagatattgccaaatttctttgcttgattattctaaaaggtaagtttcatatgcaattc |
3018140 |
T |
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| Q |
414 |
atctagataatattctaattacatcctatg |
443 |
Q |
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| T |
3018141 |
atctagataatattctaattacatcctatg |
3018170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 3020842 - 3021251
Alignment:
| Q |
18 |
gaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||| |
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| T |
3020842 |
gaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggttgtttcaccaaatgctcgaaagttgggggaaagt |
3020941 |
T |
|
| Q |
118 |
gttcttcaaaagtgtgcaacaaagcttataatacctatttgcggcatgctgtgaatatgttgggtactatggttg---------atgttcttgactcaat |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||| |||| | |
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| T |
3020942 |
gttcttcaaaagtgtgcaacaaggcttataatacctgtttgcggtatgttgtgaatatgttgggtactatggttgattataatcatgttcttgcctcagt |
3021041 |
T |
|
| Q |
209 |
aatcatgcagtgaactttggtgcaa-atgat---gcatcaatcatgtgggaaacttcggtgcttttggttaagaattttttgtgccaaattagttg-ttt |
303 |
Q |
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|||||| | ||||||||||||| ||| | | ||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||| ||| |
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| T |
3021042 |
gatcatgtggcaaactttggtgcaatatgttctaatagcaatcatgtggtgaacttcagtgc---tggctaagaattttttgtgccaaattagttgtttt |
3021138 |
T |
|
| Q |
304 |
atctttaaaaatattttct-------agttaagaccaaacttcatatatgtatgtttat--agatattgccaaatttctttgcttgattattctaaaagg |
394 |
Q |
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|||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||| |||||||||||| |
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| T |
3021139 |
atctttaaaaatatttactacttaagagttaagaccaaacttcatat-tgtatgtttatacagatattgccaaaagtcttttcttgactattctaaaagg |
3021237 |
T |
|
| Q |
395 |
taagtttcatatgc |
408 |
Q |
| |
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|||||| ||||||| |
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|
| T |
3021238 |
taagttgcatatgc |
3021251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 3033715 - 3033830
Alignment:
| Q |
30 |
atttcattatggattgcttataattgtcgtgatcactatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaag |
129 |
Q |
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||||||||||| ||| |||||||||||| || || |||| |||||||||| ||||| ||||||||||||||||||||| |||| || ||| ||| |
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| T |
3033715 |
atttcattatgaatttcttataattgtcatggctgctgtcatcatgattcaggaggttttgccaattgctcgaaagttgggggaaagagtccttgaaagt |
3033814 |
T |
|
| Q |
130 |
tgtgcaacaaagctta |
145 |
Q |
| |
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|||||||||| ||||| |
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| T |
3033815 |
tgtgcaacaaggctta |
3033830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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