View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_low_10 (Length: 386)
Name: NF17915_low_10
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 30482658 - 30482305
Alignment:
| Q |
17 |
acttacaagcatatgagaacaaccttaccttcctaacagtaaaggtaagtcttnnnnnnnnnnnnnnnnccaacgtactagttaatcacattatgtcaac |
116 |
Q |
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| T |
30482658 |
acttacaagcatatgagaacaaccttaccttccttacagtaaaggtaagtcttaaaataaaaaacaaaaccaacgtactagttaatcacattatgtca-- |
30482561 |
T |
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| Q |
117 |
caattagtttgtttggtgattttattcaatttcttaaaattaaatgcaattcattttatatgtaatggtgcagggatctgggcacacagtaccggaatat |
216 |
Q |
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| T |
30482560 |
---------tgtttggtgattttattcaatttcttaaaattaaatgcaattcattttatatgtaatggtgcagggatctgggcacacagtaccggaatat |
30482470 |
T |
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| Q |
217 |
aagccacgggaagcacttgatttttacagtcgttggttggaaggaaaatcaatttaatagtaaatccaccaaccaaaattataataataaacatttatat |
316 |
Q |
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| T |
30482469 |
aagccacgggaagcacttgatttttacagtcgttggttggaaggaaaatcaatttaattgtaaatccaccaaccaaaattataataataaacatttatat |
30482370 |
T |
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| Q |
317 |
atgcacaaagttgccaagtgattaactttgtgtcccccatcatgtttttacctgcgattcaccct |
381 |
Q |
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| T |
30482369 |
atgcacaaagttgccaagtgattaactttgtgtcccccaacatgtttttacctgcgattcaccct |
30482305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 18009399 - 18009363
Alignment:
| Q |
187 |
cagggatctgggcacacagtaccggaatataagccac |
223 |
Q |
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| T |
18009399 |
cagggatctgggcacactgttccggaatataagccac |
18009363 |
T |
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