View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_low_11 (Length: 382)
Name: NF17915_low_11
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 37043403 - 37043045
Alignment:
| Q |
1 |
taaatacttttcaaattatttattagtcttgtttgccgatgactaatctctaacgaaaaatttgactgatcacttttagtggcgtctctgcttccaacca |
100 |
Q |
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| T |
37043403 |
taaatacttttcaaattatttattagtcttgcttgccgatgactaatctctaacgaaaaatttgactgatcacttttaatggcgtctctgcttccaacca |
37043304 |
T |
|
| Q |
101 |
tttttaaaattacattttatcgttgaaatttgatttaaaagtatatcattccatcctcttgcttctccaacattgggctcaaccataagcaacatcactt |
200 |
Q |
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| T |
37043303 |
tttttaaaattacattttatcgttgaaaattgatttaaaagtatatc-ttccatcctcttgcttctccaacattaggctcaaccataagcaacatcactt |
37043205 |
T |
|
| Q |
201 |
taattatacacatgatgcaaagctaaagcactaccaggcagcagcacatgcatgctcttggatacacttttaatagtttttcattttatgatacctaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37043204 |
taattatacacatgatgcaaagctaaagcactaccaggcagcagcacatgcatgctcttggatacacttttaatagtttttcattttatgatacctaaag |
37043105 |
T |
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| Q |
301 |
ataatacaccaatatactttaattcatgcatactccatgaatgacattttaaaaataatg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37043104 |
ataatacaccaatatactttaattcatgcatactccatgaatgacattttaaaaataatg |
37043045 |
T |
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