View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_low_12 (Length: 372)
Name: NF17915_low_12
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 156 - 353
Target Start/End: Original strand, 38749090 - 38749294
Alignment:
| Q |
156 |
atccgtttctcttccttgacttagtatagtt--ttaccctacaaattctcattcataactccataatttgctggataagcatgcgataaaattgttgggg |
253 |
Q |
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| T |
38749090 |
atccgtttctcttccttgacttagtatagttagttaccctacaaattctcattcataactccataatttgctggataagcatgcgataaaattgttgggg |
38749189 |
T |
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| Q |
254 |
catgactcatgatcaggtctaagatatgg----tatattgag-taaaaacaattacataaatgagttgcaaatcaaatcttatcttaacttaattttaag |
348 |
Q |
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| T |
38749190 |
catgactcatgatcaggtctaagatatggcatatatattgagctaaaaacaattgcataaataagttgcaaatcaaatcttatcttaacttaattttaag |
38749289 |
T |
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| Q |
349 |
ttatt |
353 |
Q |
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||||| |
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| T |
38749290 |
ttatt |
38749294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 38748947 - 38749061
Alignment:
| Q |
13 |
aatatccgtgcctttttggttttgggtgacatgaaaattctagatcacgatatatagaattttatgtatagaatacacaaagaggtgtccatgcaatgta |
112 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38748947 |
aatatccgtgcccttttggttttgggtgacatgaaaattctagatcacgatatatagaattttatgtatagaatacacaaagaggtgtccatgaaatgta |
38749046 |
T |
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| Q |
113 |
ctttgatacattgca |
127 |
Q |
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| T |
38749047 |
ctttgatacattgca |
38749061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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