View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_low_13 (Length: 331)
Name: NF17915_low_13
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 7622983 - 7622671
Alignment:
| Q |
1 |
agcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622983 |
agcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
7622884 |
T |
|
| Q |
101 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7622883 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattgccaagagaaa |
7622784 |
T |
|
| Q |
201 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622783 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
7622684 |
T |
|
| Q |
301 |
ccctgaagagttt |
313 |
Q |
| |
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||||||||||||| |
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| T |
7622683 |
ccctgaagagttt |
7622671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 7627534 - 7627222
Alignment:
| Q |
1 |
agcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627534 |
agcagcagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
7627435 |
T |
|
| Q |
101 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7627434 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattgccaagagaaa |
7627335 |
T |
|
| Q |
201 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627334 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
7627235 |
T |
|
| Q |
301 |
ccctgaagagttt |
313 |
Q |
| |
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||||||||||||| |
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| T |
7627234 |
ccctgaagagttt |
7627222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 7634670 - 7634358
Alignment:
| Q |
1 |
agcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
100 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7634670 |
agcaatagtggtttgggctatgacaacattgatgaacaatcctagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaatatttt |
7634571 |
T |
|
| Q |
101 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | |||||||| || ||||||||||||||| |||||||||||| |
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| T |
7634570 |
ataaatgaagatgatattgaaaagctaccttatcttaaagcagtggtgaaagagacaatgagattatttccaccatcaccattactagtaccaagagaaa |
7634471 |
T |
|
| Q |
201 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
7634470 |
caatagaaaattgtaacatagatggttatgagattaaaccaaaaactttagtgtatgttaatgcatgggccataggaagggatcctgagaattggaaaga |
7634371 |
T |
|
| Q |
301 |
ccctgaagagttt |
313 |
Q |
| |
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||||||||||||| |
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|
| T |
7634370 |
ccctgaagagttt |
7634358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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