View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17915_low_18 (Length: 283)

Name: NF17915_low_18
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17915_low_18
NF17915_low_18
[»] chr2 (1 HSPs)
chr2 (10-264)||(4238492-4238746)
[»] chr7 (2 HSPs)
chr7 (15-156)||(8429970-8430111)
chr7 (15-156)||(8449300-8449441)
[»] scaffold0141 (1 HSPs)
scaffold0141 (15-156)||(7437-7578)
[»] chr4 (1 HSPs)
chr4 (44-125)||(8564480-8564561)
[»] chr6 (2 HSPs)
chr6 (38-151)||(14973379-14973490)
chr6 (15-77)||(33894375-33894436)
[»] scaffold0638 (1 HSPs)
scaffold0638 (15-159)||(7945-8086)
[»] chr5 (2 HSPs)
chr5 (15-86)||(10740327-10740398)
chr5 (21-86)||(10762767-10762832)
[»] chr1 (1 HSPs)
chr1 (19-62)||(44272462-44272505)
[»] chr8 (1 HSPs)
chr8 (15-124)||(27687515-27687623)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 4238746 - 4238492
Alignment:
Q  10 attatactctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattccttcttctcacttcctttgttttcttcaaatctat 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4238746 attacactctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaatctat 4238647  T
Q  110 gcacattgcaagcttaacctttgctttcatggagtttgagattacctctttaacactatccttactatttaaaataatagtggtgatcccagtaatttca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4238646 gcacattgcaagcttaacctttgctttcatggagtttgagattacctctttaacactatccttaccatttaaaataatagtggtgatcccagtaatttca 4238547  T
Q  210 acaatacacatatttgtctgattcttaaatactcctagtcctagtgaatatagac 264  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4238546 acaatacatatatttgtctgattcttaaatactcctagtcctagtgaatatagac 4238492  T

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Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 8429970 - 8430111
Alignment:
Q  15 actctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattccttcttctcacttcctttgttttcttcaaatctatgcaca 114  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  8429970 actctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcaca 8430069  T
Q  115 ttgcaagcttaacctttgctttcatggagtttgagattacct 156  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  8430070 ttgcaagcttaatctttgctttcatggagtttgagattacct 8430111  T

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Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 8449441 - 8449300
Alignment:
Q  15 actctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattccttcttctcacttcctttgttttcttcaaatctatgcaca 114  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||    
T  8449441 actctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttgttttcttcaaagctatgcaca 8449342  T
Q  115 ttgcaagcttaacctttgctttcatggagtttgagattacct 156  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  8449341 ttgcaagcttaatctttgctttcatggagtttgagattacct 8449300  T

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Target: scaffold0141 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 7578 - 7437
Alignment:
Q  15 actctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattccttcttctcacttcctttgttttcttcaaatctatgcaca 114  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||    
T  7578 actctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttgttttcttcaaagctatgcaca 7479  T
Q  115 ttgcaagcttaacctttgctttcatggagtttgagattacct 156  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  7478 ttgcaagcttaatctttgctttaatggagtttgagattacct 7437  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 8564480 - 8564561
Alignment:
Q  44 taatacttagattttgagaataataaaattccttcttctcacttcctttgttttcttcaaatctatgcacattgcaagctta 125  Q
    ||||||||| |||||  ||||||| ||||||||| ||| ||||| |||||| ||||| ||||||||||||||||||| ||||    
T  8564480 taatacttacattttctgaataatgaaattccttgttcacactttctttgtcttctttaaatctatgcacattgcaatctta 8564561  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 14973379 - 14973490
Alignment:
Q  38 tcattgtaatacttagattttgagaataataaaattccttcttctcacttcctttgttttcttcaaatctatgcacattgcaagcttaacctttgctttc 137  Q
    ||||||||||||| |||||||| ||||| ||||||||| |||||| || | |||||| ||||||| | |||||   ||||||||||||   | | |||||    
T  14973379 tcattgtaatactcagattttgggaatagtaaaattccctcttcttacatactttgtcttcttcatagctatg--tattgcaagcttattttctactttc 14973476  T
Q  138 atggagtttgagat 151  Q
    ||||||||||||||    
T  14973477 atggagtttgagat 14973490  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 33894436 - 33894375
Alignment:
Q  15 actctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattcctt 77  Q
    ||||||||||||||||||| |||||||||||||||  ||| |||  |||||||||||||||||    
T  33894436 actctatataaagctatagagcttcattgtaataccgaga-tttatgaataataaaattcctt 33894375  T

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Target: scaffold0638 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 8086 - 7945
Alignment:
Q  15 actctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattccttcttctcacttcctttgttttcttcaaatctatgcaca 114  Q
    |||||||||| |||| ||||||  || ||||||||  |||||||| |||||||||| |||||||||||||| | | |||| ||||| ||| | |||||||    
T  8086 actctatatacagctgtagtgcgccaatgtaatac--agattttgtgaataataaa-ttccttcttctcaccttccttgtcttctttaaagccatgcaca 7990  T
Q  115 ttgcaagcttaacctttgctttcatggagtttgagattacctctt 159  Q
    ||| |||  ||   ||  |||||||| ||||||||||||||||||    
T  7989 ttgtaagtctatttttcactttcatgaagtttgagattacctctt 7945  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 10740327 - 10740398
Alignment:
Q  15 actctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattccttcttctcact 86  Q
    ||||||||||| | ||| ||  |||||||||||||| |||| ||| |||||||||||||||||||| |||||    
T  10740327 actctatataaggatatggtaattcattgtaatactcagatattgtgaataataaaattccttcttatcact 10740398  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 10762767 - 10762832
Alignment:
Q  21 tataaagctatagtgcttcattgtaatacttagattttgagaataataaaattccttcttctcact 86  Q
    ||||| ||||||||  ||||||||||| || | |||||| |||||||| ||||||||||| |||||    
T  10762767 tataaggctatagtaattcattgtaatgctcaaattttgtgaataatataattccttcttatcact 10762832  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 44272505 - 44272462
Alignment:
Q  19 tatataaagctatagtgcttcattgtaatacttagattttgaga 62  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  44272505 tatataaagctataatgcttcattgcaatacttagattttgaga 44272462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 27687515 - 27687623
Alignment:
Q  15 actctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattccttcttctcacttcctttgttttcttcaaatctatgcaca 114  Q
    ||||||||||||| |||||  | ||||||||||||||||||| |  |||||||||| ||||||  ||||  || | |||| ||| ||||  || ||||||    
T  27687515 actctatataaagatatagcacctcattgtaatacttagattgt-tgaataataaagttcctttctctctatttcattgtcttcatcaagcctctgcaca 27687613  T
Q  115 ttgcaagctt 124  Q
    ||||||||||    
T  27687614 ttgcaagctt 27687623  T

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