View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17915_low_19 (Length: 250)

Name: NF17915_low_19
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17915_low_19
NF17915_low_19
[»] chr4 (19 HSPs)
chr4 (1-240)||(17645477-17645716)
chr4 (9-197)||(16481154-16481342)
chr4 (8-191)||(17604857-17605040)
chr4 (8-195)||(17663948-17664135)
chr4 (8-214)||(17649924-17650130)
chr4 (6-138)||(16480667-16480799)
chr4 (8-197)||(17644938-17645127)
chr4 (22-197)||(17631454-17631629)
chr4 (8-196)||(17676238-17676426)
chr4 (8-118)||(17631986-17632096)
chr4 (106-214)||(17605450-17605558)
chr4 (135-234)||(16480616-16480715)
chr4 (135-214)||(17632068-17632147)
chr4 (8-104)||(20751374-20751470)
chr4 (141-234)||(16480517-16480610)
chr4 (8-104)||(18766614-18766710)
chr4 (8-104)||(17950001-17950097)
chr4 (8-104)||(17953853-17953949)
chr4 (8-169)||(29883404-29883565)
[»] chr8 (1 HSPs)
chr8 (98-214)||(32670006-32670122)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 17645477 - 17645716
Alignment:
Q  1 aactatgccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaa 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17645477 aactatggcctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaa 17645576  T
Q  101 ccaagttgttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatccttcagtg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17645577 ccaagttgttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgaatggttttccttcaacacaaacaaatgtgtctaatccttcagtg 17645676  T
Q  201 tttctgaatgctacgagttcaactttgcctatgagtataa 240  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  17645677 tttctgaatgctacgagttcaactttgcctatgaatataa 17645716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 16481342 - 16481154
Alignment:
Q  9 cctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaagttg 108  Q
    |||| |||| || |||| |||||||| |||||||||||| |||||||||||||| |||| || |||||||  ||||| || ||||||||||||||| |||    
T  16481342 cctcatcaatcacaagtcttcaacaacataaatgttcaatatcagccaataattaaatcccatgaacattattatccaattaatggtagtaaccaaattg 16481243  T
Q  109 ttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatccttca 197  Q
    | ||| |||| ||||| ||||||||||||| || |||||||||| ||| |||||||||||||| |||||||||| || |||||||||||    
T  16481242 tgaattgtttccattcctcacaaacaaatgctaataaccaacttctgaatggttttccttcaatacaaacaaatatggctaatccttca 16481154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 17604857 - 17605040
Alignment:
Q  8 ccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaagtt 107  Q
    ||||| |||| || |||| ||||||||||||||| ||||| |||| ||||||||| ||||||| |||||||  |||||||  ||||||||||||||| ||    
T  17604857 ccctcatcaatcacaagtcttcaacaatataaattttcaatatcatccaataattaaatctcaagaacattattatcctactaatggtagtaaccaattt 17604956  T
Q  108 gttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaat 191  Q
    || |||| ||||||||| | ||||||||||| || ||||||| || ||| |||||| |||||||||||||||||| || |||||    
T  17604957 gtgaatgattttcattccttacaaacaaatgctaataaccaaattctgaatggtttcccttcaacacaaacaaatatggctaat 17605040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 17664135 - 17663948
Alignment:
Q  8 ccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaagtt 107  Q
    ||||| ||||||| |||||||||||||| || |||| ||| || |||||||||||| ||  |||||||||   |||||||||||||||||||||||| ||    
T  17664135 ccctcatcaaccacaagtattcaacaatttagatgtccaatattagccaataattccataccaggaacatcattatcctatgaatggtagtaaccaactt 17664036  T
Q  108 gttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatcctt 195  Q
    || |||||||| ||| | |||||||||||||  | |||||||||||||| |||||| |||| |||||||  ||| |||||||||||||    
T  17664035 gtgaatggtttccatacctcacaaacaaatgacaataaccaacttgtgaatggtttccctttaacacaagaaaacgtgtctaatcctt 17663948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 17649924 - 17650130
Alignment:
Q  8 ccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaagtt 107  Q
    ||||| ||||||| ||||| |||||||| || |||| ||| |||| |||||||| | ||  |||||||||   |||||||||||||||||||||||| ||    
T  17649924 ccctcatcaaccacaagtagtcaacaatttagatgtccaatatcaaccaataatcccataccaggaacatcattatcctatgaatggtagtaaccaactt 17650023  T
Q  108 gttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatccttcagtgtttctga 207  Q
    || |||||||| ||| | |||||||||||||  | ||||||| |||||| |||||| ||||||||||||  ||| ||||||||||||||| ||| || ||    
T  17650024 gtgaatggtttccatgcctcacaaacaaatgacaataaccaagttgtgaatggtttcccttcaacacaagaaaacgtgtctaatccttcaatgtctccga 17650123  T
Q  208 atgctac 214  Q
     ||||||    
T  17650124 ttgctac 17650130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 16480799 - 16480667
Alignment:
Q  6 tgccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaag 105  Q
    ||||||||||||||| |||||||||||||||||||||  ||| ||||||||||||| |||||||||||| |||  ||||||  |||||||||||||||||    
T  16480799 tgccctcctcaaccacaagtattcaacaatataaatgcgcaatatcagccaataatccaatctcaggaatattattatccttcgaatggtagtaaccaag 16480700  T
Q  106 ttgttaatggttttcattcttcacaaacaaatg 138  Q
    | || |||||||||| |||  ||||||||||||    
T  16480699 tcgtcaatggttttccttcaacacaaacaaatg 16480667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 17644938 - 17645127
Alignment:
Q  8 ccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaagtt 107  Q
    |||||||||| || |||  || ||||||| |||||||||| |||| |||||| ||||||||||  ||||||  |||||||| |||  ||||| |||| ||    
T  17644938 ccctcctcaatcacaagccttgaacaatacaaatgttcaaaatcatccaatatttcaatctcaaaaacattattatcctatcaatcatagtagccaactt 17645037  T
Q  108 gttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatccttca 197  Q
    || |||||| ||||||| ||||||||||||   ||||||||||||||||  || || ||||||||||||||||||||||| |||| ||||    
T  17645038 gtgaatggtattcattcctcacaaacaaattacagtaaccaacttgtgaaaggcttcccttcaacacaaacaaatgtgtccaatctttca 17645127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 17631454 - 17631629
Alignment:
Q  22 aagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaagttgttaatggttttca 121  Q
    |||| ||||||||||||||||||||| || | |||||||||  |||||| |||||||  |||||||| |||||||| |||||| |||| |||||||   |    
T  17631454 aagtcttcaacaatataaatgttcaatataatccaataattacatctcaagaacattattatcctattaatggtagcaaccaatttgtgaatggttccaa 17631553  T
Q  122 ttcttcacaaacaaatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatccttca 197  Q
    ||| ||||||||||||| || || ||||||| | | |||||| ||||||  ||||||||||||| |||||||||||    
T  17631554 ttcctcacaaacaaatgctaatacccaacttctcaatggtttcccttcattacaaacaaatgtggctaatccttca 17631629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 17676426 - 17676238
Alignment:
Q  8 ccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaagtt 107  Q
    ||||| ||||||| ||||| |||||||| || |||| ||| |||| |||||||||| ||  |||||||||   |||||||||||||||||||||||| ||    
T  17676426 ccctcatcaaccacaagtagtcaacaatttagatgtccaatatcaaccaataattccataccaggaacatcattatcctatgaatggtagtaaccaactt 17676327  T
Q  108 gttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatccttc 196  Q
    || ||| |||| ||| | || ||||||||||  | ||||||| |||||| |||||| |||||||||||   ||||||| ||||||||||    
T  17676326 gtgaatagtttccatgcctcccaaacaaatgacaataaccaagttgtgaatggtttcccttcaacacatgaaaatgtgcctaatccttc 17676238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 17631986 - 17632096
Alignment:
Q  8 ccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaagtt 107  Q
    |||| |||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||| ||| |||   ||||| ||||||||||||||||||||    
T  17631986 ccctgctcaaccacaagtattcaacaacataaatgctcaatatcagccaataattcaatctcatgaatattacgatcctctgaatggtagtaaccaagtt 17632085  T
Q  108 gttaatggttt 118  Q
    || ||||||||    
T  17632086 gtgaatggttt 17632096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 17605450 - 17605558
Alignment:
Q  106 ttgttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatccttcagtgtttct 205  Q
    |||| |||||||| |||||||||||||||||||  | |||  ||||||||| |||||| ||||| ||||||||||||||||||||||||||||| | |||    
T  17605450 ttgtgaatggtttccattcttcacaaacaaatgtcattaatgaacttgtgaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctct 17605549  T
Q  206 gaatgctac 214  Q
    |||||||||    
T  17605550 gaatgctac 17605558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 234
Target Start/End: Complemental strand, 16480715 - 16480616
Alignment:
Q  135 aatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatccttcagtgtttctgaatgctacgagttcaactttgcctatga 234  Q
    ||||||||||||||| | || | |||||||||||||||||||||||||||||||||| ||||||||  |||||||||||| | | |||||||||||||||    
T  16480715 aatggtagtaaccaagtcgtcaatggttttccttcaacacaaacaaatgtgtctaattcttcagtgactctgaatgctaccaatccaactttgcctatga 16480616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 17632068 - 17632147
Alignment:
Q  135 aatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatccttcagtgtttctgaatgctac 214  Q
    ||||||||||||||| |||||| |||||| ||||||||||||| |||| |||||||||||||||||| ||||||||||||    
T  17632068 aatggtagtaaccaagttgtgaatggtttcccttcaacacaaataaatatgtctaatccttcagtgtctctgaatgctac 17632147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 20751470 - 20751374
Alignment:
Q  8 ccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaa 104  Q
    ||||| ||||||| || ||||||||||||||||||||||| ||||||||||||  |||||||| ||| |||  |||||||||||||||||| |||||    
T  20751470 ccctcatcaaccacaattattcaacaatataaatgttcaatatcagccaataacccaatctcaagaatattattatcctatgaatggtagtgaccaa 20751374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 16480610 - 16480517
Alignment:
Q  141 agtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatccttcagtgtttctgaatgctacgagttcaactttgcctatga 234  Q
    |||||||||| ||||||||||||| ||||  |||||||||||||||||||| |||| |||  |||||||||||| | | |||||||||||||||    
T  16480610 agtaaccaacctgtgattggtttttcttcctcacaaacaaatgtgtctaattcttcggtgactctgaatgctaccaatccaactttgcctatga 16480517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 18766614 - 18766710
Alignment:
Q  8 ccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaa 104  Q
    ||||| ||||||| || ||||||||||||||||||| ||| ||||||||||||  |||||||| ||| |||  |||| ||||||||||||| |||||    
T  18766614 ccctcatcaaccacaattattcaacaatataaatgtccaatatcagccaataacccaatctcaagaatattattatcttatgaatggtagtgaccaa 18766710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 17950097 - 17950001
Alignment:
Q  8 ccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaa 104  Q
    ||||| ||||||| || ||||||||||||||||||| ||| || | |||||||  |||||||| ||| |||  |||||||||||||| ||| |||||    
T  17950097 ccctcatcaaccacaattattcaacaatataaatgtccaatataatccaataacccaatctcaagaatattattatcctatgaatggcagtgaccaa 17950001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 17953949 - 17953853
Alignment:
Q  8 ccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaa 104  Q
    ||||| ||||||| || ||||||||||||||||||| ||| || | |||||||  |||||||| ||| |||  |||||||||||||| ||| |||||    
T  17953949 ccctcatcaaccacaattattcaacaatataaatgtccaatataatccaataacccaatctcaagaatattattatcctatgaatggcagtgaccaa 17953853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 29883404 - 29883565
Alignment:
Q  8 ccctcctcaaccaaaagtattcaacaatataaatgttcaacatcagccaataattcaatctcaggaacatttgtatcctatgaatggtagtaaccaagtt 107  Q
    |||| ||||| || ||||||| |||||| | |||||||||  |||   |||||||||||| ||   ||| |  ||||||||||||||||||| |||  ||    
T  29883404 ccctactcaatcacaagtattgaacaatgtgaatgttcaatctcaattaataattcaatcccaaccacaatattatcctatgaatggtagtagccagctt 29883503  T
Q  108 gttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgattggttttccttc 169  Q
    || |||||||| | ||  || |||| |||||||| |||||||| |||||  |||||||||||    
T  29883504 gtgaatggtttccttttatcgcaaataaatggtattaaccaacatgtgaacggttttccttc 29883565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 32670006 - 32670122
Alignment:
Q  98 taaccaagttgttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgattggttttccttcaacacaaacaaatgtgtctaatccttca 197  Q
    ||||||| |||| ||| |||||||  | |||||| |||||||||||||||||||||| | ||||||| || || |||||||| || ||||||||||||||    
T  32670006 taaccaacttgtgaattgttttcacacatcacaagcaaatggtagtaaccaacttgtcaatggttttgctccatcacaaacatatctgtctaatccttca 32670105  T
Q  198 gtgtttctgaatgctac 214  Q
    |||| ||||||||||||    
T  32670106 gtgtctctgaatgctac 32670122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University