View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17915_low_2 (Length: 531)

Name: NF17915_low_2
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17915_low_2
NF17915_low_2
[»] chr1 (2 HSPs)
chr1 (24-531)||(3018130-3018634)
chr1 (308-365)||(24141665-24141722)


Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 24 - 531
Target Start/End: Complemental strand, 3018634 - 3018130
Alignment:
Q  24 ggcaaattgacgaatcaggatatgagcatcctcttgctgacatgcaatgtatggatgcgaaatggcaaaataccatcttatgtattcaattgttgtcttt 123  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3018634 ggcaaattgacgaatcaggatatgagcatcctcctgctgacatgcaatgtatggatgcgaaatggcaaaataccatcttatgtattcaattgttgtcttt 3018535  T
Q  124 agaccaatcggagcaggcatacccaaatctcaccgatttaacacataatcaagatattgcgctagttgtgttcaccttgggatttgcactcttatgtgga 223  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||  |||||||||||||||||||||||||||||    
T  3018534 agaccagtcggagcaggcatacccaaatctcactgatttaacacataatcaagatattatgctagttgt--tcaccttgggatttgcactcttatgtgga 3018437  T
Q  224 tggcttgggatggtctggacgtaaccaaactggtgaaacacccgctttgacatgtatcgaaccctatgaggtatgtatccaagccatctaaaagaaagat 323  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3018436 tggcttgggatggtctggacgtaaccaaactggcgcaacacccgctttgacatgtatcgaaccctatgaggtatgtatccaagccatctaaaagaaagat 3018337  T
Q  324 tgattcactcaaatggacacgtctggcggtggggctgatacatcgttgtaatgtacccatccattattataaacaannnnnnnnaatgttccctgaataa 423  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| |||||    
T  3018336 tgattcactcaaatggacacgtct-gcggtggggctgatacatcgttgtaatgtacccatccattattataaacaattttttttaatgttccctaaataa 3018238  T
Q  424 tggtatagactagacacatccgttaaacaatgaacctaaaaaatgatttctttgcttataaagtcaccataggatgtaattagagtattatctagatgaa 523  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3018237 cggtatagactagacacatccgttaaacaatgaacctaaaaaatgatttctttgcttataaagtcaccataggatgtaattagaatattatctagatgaa 3018138  T
Q  524 ttgcatat 531  Q
    ||||||||    
T  3018137 ttgcatat 3018130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 24141665 - 24141722
Alignment:
Q  308 catctaaaagaaagattgattcactcaaatggacacgtctggcggtggggctgataca 365  Q
    |||| |||| ||||| |||||| ||| || ||||| ||||||||||||||||||||||    
T  24141665 catccaaaataaagactgattcgctcgaacggacatgtctggcggtggggctgataca 24141722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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