View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17915_low_26 (Length: 237)

Name: NF17915_low_26
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17915_low_26
NF17915_low_26
[»] chr8 (4 HSPs)
chr8 (1-237)||(29005329-29005565)
chr8 (3-237)||(2292676-2292904)
chr8 (91-151)||(7019571-7019631)
chr8 (182-227)||(28969659-28969704)
[»] chr3 (6 HSPs)
chr3 (10-236)||(28247109-28247333)
chr3 (26-202)||(1337950-1338123)
chr3 (33-114)||(18721178-18721259)
chr3 (37-108)||(20037929-20037999)
chr3 (51-106)||(36643777-36643832)
chr3 (37-109)||(32750136-32750206)
[»] chr1 (9 HSPs)
chr1 (83-237)||(42561000-42561152)
chr1 (69-237)||(25788563-25788730)
chr1 (37-227)||(46440062-46440250)
chr1 (10-98)||(42561170-42561260)
chr1 (2-114)||(21365357-21365471)
chr1 (87-137)||(19269589-19269639)
chr1 (182-237)||(40368038-40368093)
chr1 (72-109)||(20755007-20755044)
chr1 (182-227)||(34969386-34969431)
[»] chr5 (9 HSPs)
chr5 (2-150)||(41568506-41568653)
chr5 (37-153)||(42422083-42422199)
chr5 (3-163)||(42296330-42296492)
chr5 (37-98)||(3956248-3956309)
chr5 (2-95)||(21344682-21344775)
chr5 (47-114)||(36961374-36961441)
chr5 (24-81)||(17923497-17923554)
chr5 (182-227)||(33550435-33550480)
chr5 (167-227)||(6205871-6205930)
[»] chr6 (3 HSPs)
chr6 (88-227)||(23958679-23958817)
chr6 (68-152)||(28907600-28907685)
chr6 (5-66)||(35117048-35117109)
[»] chr2 (7 HSPs)
chr2 (49-138)||(31086324-31086414)
chr2 (101-237)||(32630749-32630885)
chr2 (2-93)||(11290093-11290184)
chr2 (34-91)||(45554978-45555036)
chr2 (32-96)||(11259178-11259241)
chr2 (183-237)||(11259327-11259381)
chr2 (132-237)||(31085350-31085454)
[»] chr7 (2 HSPs)
chr7 (10-227)||(5357157-5357371)
chr7 (190-237)||(9059354-9059401)
[»] chr4 (6 HSPs)
chr4 (3-92)||(9633702-9633791)
chr4 (2-117)||(32640112-32640228)
chr4 (133-237)||(49308194-49308297)
chr4 (71-114)||(47017591-47017634)
chr4 (32-90)||(38304776-38304834)
chr4 (57-106)||(44341100-44341149)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 29005329 - 29005565
Alignment:
Q  1 tctttttctcttttcaatttgatccttcatctaaaatattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaatagataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29005329 tctttttctcttttcaatttgatccttcatctaaaatattttatttactattttatcctttttatacaaatatttaaattagtaattaaaaaatagataa 29005428  T
Q  101 atctcattataatactctactacaatagaaacaatattatcttaaaaatatataaataaaatagacgattttgagttggattttttcattattcaaagta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29005429 atctcattataatactctactacaatagaaacaatattatcttaaaaatatataaataaaatagacgattttgagttggattttttcattattcaaatta 29005528  T
Q  201 tactgttaaacaaatttttctataatattgttatatt 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  29005529 tactgttaaacaaatttttctataatattgttatatt 29005565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 2292676 - 2292904
Alignment:
Q  3 tttttctcttttcaatttgatccttcatctaaaatattttagtt-actattttatcctttttatacaaatatttaaattagtaattaaaaaatagataaa 101  Q
    |||||| ||||||||||| ||||||||| |||  | |||| ||| | ||| |||||||||||||| |||||||||||||| ||||| |||||   |||||    
T  2292676 tttttcccttttcaattttatccttcatttaa--tttttttgttgattatattatcctttttataaaaatatttaaattattaatttaaaaa---ataaa 2292770  T
Q  102 tctcattataatactctactacaatagaaacaatattatcttaaaaatatataaataaaatagacgattttgagttggattttttcattattcaaagtat 201  Q
        |||| ||||| | |||||||||| |||||||||| ||||||||||||||||  ||||||| |||||||||||||| ||||||||||||| || |||    
T  2292771 ataaattaaaataccc-actacaataggaacaatattaacttaaaaatatataaaggaaatagaagattttgagttgga-tttttcattattctaattat 2292868  T
Q  202 actgttaaacaaatttttctataatattgttatatt 237  Q
    ||  ||||||||||||| || ||||| | |||||||    
T  2292869 acccttaaacaaattttcctgtaataatattatatt 2292904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 7019631 - 7019571
Alignment:
Q  91 aaatagataaatctcattataatactctactacaatagaaacaatattatcttaaaaatat 151  Q
    |||||||||||||||  || ||||| | |||||||||| ||||| ||||||||||||||||    
T  7019631 aaatagataaatctccataaaataccccactacaataggaacaacattatcttaaaaatat 7019571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 28969704 - 28969659
Alignment:
Q  182 tttttcattattcaaagtatactgttaaacaaatttttctataata 227  Q
    ||||||||||||| || |||||| |||||||| |||||||||||||    
T  28969704 tttttcattattccaattatacttttaaacaactttttctataata 28969659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 28247109 - 28247333
Alignment:
Q  10 cttttcaatttgatccttcatctaaaatattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaatagataaatctcatta 109  Q
    ||||||||||| | |||||   |||| ||||||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  28247109 cttttcaattttacccttccgttaaagtattttatttactattttatactttttataccaatatttaaattaataattaaaaaatagataaatctcatta 28247208  T
Q  110 taatactctactacaatagaaacaatattatcttaaaaatatataaataaaatagacgattttgagttggattttttcattattcaaagtatactgttaa 209  Q
    |||||||  |||||||||  ||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||| ||| || |||||  ||||    
T  28247209 taatacttcactacaataagaacaatattatcttaaaaatatataaagaaaataga-gattttgggttggatttttt-attgttccaattatacccttaa 28247306  T
Q  210 acaaatttttctataatattgttatat 236  Q
    |||||||||  ||||||  ||||||||    
T  28247307 acaaattttcatataatgatgttatat 28247333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 1337950 - 1338123
Alignment:
Q  26 ttcatctaaaatattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaatagataaatctcattataatactctactacaa 125  Q
    ||||| |||||||||||| ||| ||||||||||||||||||  | ||||||||||| |||||||||||||||||||| |||||| ||||| |||||||||    
T  1337950 ttcatttaaaatattttatttattattttatcctttttataacagtatttaaattattaattaaaaaatagataaatatcattaaaataccctactacaa 1338049  T
Q  126 tagaaacaatattatcttaaaaatatataaataaaatagacgattttgagttggattttttcattattcaaagtata 202  Q
    | | ||||||||||  |||||||| ||| ||  |||||   ||||||| |||||| |||||||||||||||| ||||    
T  1338050 tgggaacaatatta--ttaaaaatttattaaggaaatatgagattttgggttgga-tttttcattattcaaattata 1338123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 18721178 - 18721259
Alignment:
Q  33 aaaatattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaatagataaatctcattataata 114  Q
    ||||||||||| ||||||||||||||||||||||  | || |||||||| |||||||||||||| |||||||||||| ||||    
T  18721178 aaaatattttatttactattttatcctttttataatattacttaaattattaattaaaaaatagttaaatctcattaaaata 18721259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 20037999 - 20037929
Alignment:
Q  37 tattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaatagataaatctcatt 108  Q
    ||||||| |||||||||||||||||| |||  | ||||||||||| ||||||||||||   |||||||||||    
T  20037999 tattttatttactattttatcctttt-ataatattatttaaattattaattaaaaaatgtttaaatctcatt 20037929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 36643777 - 36643832
Alignment:
Q  51 ttttatcctttttatacaaatatttaaattagtaattaaaaaatagataaatctca 106  Q
    ||||||| |||||| |  ||||||||||||| ||||||| ||||||||||||||||    
T  36643777 ttttatcatttttacaataatatttaaattattaattaagaaatagataaatctca 36643832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 32750136 - 32750206
Alignment:
Q  37 tattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaatagataaatctcatta 109  Q
    ||||||| ||||||||||||| ||||||    | || |||||||| |||||||||||||| ||||||||||||    
T  32750136 tattttatttactattttatcttttttaat--attacttaaattactaattaaaaaatagttaaatctcatta 32750206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 42561152 - 42561000
Alignment:
Q  83 taattaaaaaatagataaatctcattataatactctactacaatagaaacaatattatcttaaaaatatataaataaaatagacgattttgagttggatt 182  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||  |||| || |||||||  ||||| |    
T  42561152 taattaaaaaatagataaatttcattataatactccactataatagcaacaatattatcttaaaaatatataaaggaaatgga-gattttggattgga-t 42561055  T
Q  183 ttttcattattcaaagtatactgttaaacaaatttttctataatattgttatatt 237  Q
    |||||||||||| || |||||  |||||||||||||||||||||| |||||||||    
T  42561054 ttttcattattccaattatacccttaaacaaatttttctataataatgttatatt 42561000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 25788563 - 25788730
Alignment:
Q  69 aatatttaaattagtaattaaaaaatagataaatctcattataatactctactacaatagaaacaatattatcttaaaaatatataaataaaatagacga 168  Q
    ||||||||||||| ||||||||| | ||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||||||||  |||||   ||    
T  25788563 aatatttaaattattaattaaaataaagataaacctcatcataatactcaactacaataggaacaatattatcttaaaaatatataaagtaaatatgaga 25788662  T
Q  169 ttttgagttggattttttcattattcaaagtatactgttaaacaaatttttctataatattgttatatt 237  Q
    ||||| |||||||||| | ||||||| |  |||||  |||||||||||||||||||||| | |||||||    
T  25788663 ttttgggttggattttgt-attattccagatatacctttaaacaaatttttctataataatattatatt 25788730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 227
Target Start/End: Complemental strand, 46440250 - 46440062
Alignment:
Q  37 tattttagttactattttatcctttttatacaaatatttaaattagtaatt-aaaaaatagataaatctcattataatactctactacaatagaaacaat 135  Q
    ||||||| ||||||||||||| ||||||||  | |||||||||||  |||| ||||||||||||||||||||||||||| || |||||||||| ||| ||    
T  46440250 tattttatttactattttatcatttttata--actatttaaattatgaatttaaaaaatagataaatctcattataataatccactacaataggaacgat 46440153  T
Q  136 attatcttaaaaatatataaataaaatagacgattttgagttggattttttcattattcaaagtatactgttaaacaaatttttctataata 227  Q
    ||||| || ||  |||||||| |||||||  ||||||| |||||| | |||| |||||| ||  ||||| ||||| || |||| ||||||||    
T  46440152 attatttttaatctatataaagaaaataggagattttgtgttgga-tatttcgttattccaataatactcttaaataatttttgctataata 46440062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 42561260 - 42561170
Alignment:
Q  10 cttttcaatttgatccttcatctaaaatattttagttactat--tttatcctttttatacaaatatttaaattagtaattaaaaaatagat 98  Q
    ||||||||||| ||||||||| |||||||||||| |||||||  |||||||||||||||  || |||||||||| ||||||||||||||||    
T  42561260 cttttcaattttatccttcatttaaaatattttatttactatattttatcctttttataacaacatttaaattattaattaaaaaatagat 42561170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 21365357 - 21365471
Alignment:
Q  2 ctttttctcttttcaatttgatccttcatctaaaatatttt--agttactattttatcctttttatacaaatatttaaattagtaattaaaaaatagata 99  Q
    ||||| ||||||| ||||| |||||| |||||| |||||||  | ||||||||||||| ||||||||  | || |||||||| |||||||||||||  ||    
T  21365357 cttttcctctttttaattttatcctttatctaacatatttttaatttactattttatcatttttataatattacttaaattattaattaaaaaatattta 21365456  T
Q  100 aatctcattataata 114  Q
    |||| ||||| ||||    
T  21365457 aatcccattaaaata 21365471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 19269639 - 19269589
Alignment:
Q  87 taaaaaatagataaatctcattataatactctactacaatagaaacaatat 137  Q
    ||||||||||||||||||||||||||| ||| ||||||||  |||||||||    
T  19269639 taaaaaatagataaatctcattataatgctccactacaatgtaaacaatat 19269589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 40368038 - 40368093
Alignment:
Q  182 tttttcattattcaaagtatactgttaaacaaatttttctataatattgttatatt 237  Q
    ||||||||||||| || |||||  ||||||||||||||||||| || |||||||||    
T  40368038 tttttcattattccaattatacccttaaacaaatttttctatattaatgttatatt 40368093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 20755044 - 20755007
Alignment:
Q  72 atttaaattagtaattaaaaaatagataaatctcatta 109  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  20755044 atttaaattattaattaaaaaatagttaaatctcatta 20755007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 34969431 - 34969386
Alignment:
Q  182 tttttcattattcaaagtatactgttaaacaaatttttctataata 227  Q
    ||||||||||||| || |||||| |||||||| |||||||||||||    
T  34969431 tttttcattattccaattatactcttaaacaattttttctataata 34969386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 41568653 - 41568506
Alignment:
Q  2 ctttttctcttttcaatttgatccttcatctaaaatattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaatagataaa 101  Q
    ||||||| ||||||||||| |   ||||| ||||||| |||| ||||||||||||||||||||||  ||||||||| ||| || ||||||||| ||||||    
T  41568653 ctttttcccttttcaattttacttttcatttaaaatactttatttactattttatcctttttatagtaatatttaa-ttattatttaaaaaattgataaa 41568555  T
Q  102 tctcattataatactctactacaatagaaacaatattatcttaaaaata 150  Q
    |||||||||||||||  |||  | |||||||||||||||||||||||||    
T  41568554 tctcattataatacttcactgtattagaaacaatattatcttaaaaata 41568506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 42422083 - 42422199
Alignment:
Q  37 tattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaatagataaatctcattataatactctactacaatagaaacaata 136  Q
    ||||||| ||||||||||||||||||||||  ||| |||||||||  |||||||||||||||||| || |||||||||||| |||| ||||  |||||||    
T  42422083 tattttatttactattttatcctttttataacaatgtttaaattatgaattaaaaaatagataaaccttattataatactccactataatatgaacaata 42422182  T
Q  137 ttatcttaaaaatatat 153  Q
    || ||||||||||||||    
T  42422183 ttgtcttaaaaatatat 42422199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 42296330 - 42296492
Alignment:
Q  3 tttttctcttttcaatttgatccttcatctaaaatattttagttactattttatccttt-ttatacaaatatttaaattagtaattaaaaaatagataaa 101  Q
    |||||| |||| |||||| |||||| || |||||||||||| ||||||| ||||| ||  |||||  |  |||| ||||| |||||||||||||||||||    
T  42296330 tttttccctttacaattttatcctttatttaaaatattttatttactatattatctttgattataatataattttaattattaattaaaaaatagataaa 42296429  T
Q  102 tctcattataatact-ctactacaatagaaacaatattatcttaaaaatatataaataaaata 163  Q
    ||||||||||||| | ||  || ||| ||||||||||||| ||||||||||| ||| ||||||    
T  42296430 tctcattataatattccttttataatggaaacaatattattttaaaaatatagaaagaaaata 42296492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 3956309 - 3956248
Alignment:
Q  37 tattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaatagat 98  Q
    ||||||| |||||||||||||||||| |||  |||||  |||||| ||||||||||||||||    
T  3956309 tattttatttactattttatccttttcataacaatataaaaattattaattaaaaaatagat 3956248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 21344682 - 21344775
Alignment:
Q  2 ctttttctcttttcaatttgatccttcatctaaaatattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaata 95  Q
    |||||||||||| |||||| | |||||||  ||  ||||||| ||| |||||||| |||||||||  | || |||||||| |||||||||||||    
T  21344682 ctttttctctttccaattttacccttcattaaatgtattttatttattattttattctttttataatattacttaaattactaattaaaaaata 21344775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 36961441 - 36961374
Alignment:
Q  47 actattttatcctttttatacaaatatttaaattagtaattaaaaaatagataaatctcattataata 114  Q
    ||||||||||||||||| ||  | |||||| |||| |||||||||||||| ||||| |||||| ||||    
T  36961441 actattttatcctttttgtaatattatttacattattaattaaaaaatagttaaatttcattaaaata 36961374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 17923497 - 17923554
Alignment:
Q  24 ccttcatctaaaatattttagttactattttatcctttttatacaaatatttaaatta 81  Q
    ||||||| |||||||||||| |||||||| ||| |||||||||  | |||||||||||    
T  17923497 ccttcatttaaaatattttatttactattatattctttttataatattatttaaatta 17923554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 33550480 - 33550435
Alignment:
Q  182 tttttcattattcaaagtatactgttaaacaaatttttctataata 227  Q
    |||||||| ||||||| ||||| ||||||||| |||||||||||||    
T  33550480 tttttcatcattcaaattataccgttaaacaactttttctataata 33550435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 6205930 - 6205871
Alignment:
Q  167 gattttgagttggattttttcattattcaaagtatactgttaaacaaatttttctataata 227  Q
    ||||||| ||||| ||||||  ||||||||| |||||| |||||||||||||| |||||||    
T  6205930 gattttgggttgggttttttg-ttattcaaattatactcttaaacaaatttttatataata 6205871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 23958679 - 23958817
Alignment:
Q  88 aaaaaatagataaatctcattataatactctactacaatagaaacaatattatcttaaaaatatataaataaaatagacgattttgagttggattttttc 187  Q
    ||||||||||||||| | ||||||||| | |||| |||||| || ||||||||||||||||||||||||  ||||||  |||||||||||||| ||||||    
T  23958679 aaaaaatagataaattttattataatattttactgcaataggaataatattatcttaaaaatatataaaataaataggagattttgagttgga-tttttc 23958777  T
Q  188 attattcaaagtatactgttaaacaaatttttctataata 227  Q
    ||||||  || || ||  ||||||||||||||||||||||    
T  23958778 attatttcaattacacctttaaacaaatttttctataata 23958817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 28907685 - 28907600
Alignment:
Q  68 aaatatttaaattagtaattaaaaaatagataaatctcattataatactctacta--caatagaaacaatattatcttaaaaatata 152  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||  || ||| |||||||||||  ||||||||||    
T  28907685 aaatatttaa-ttattaattaaaaaatagatacatctcattataatactccactacccagtaggaacaatattattgtaaaaatata 28907600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 35117048 - 35117109
Alignment:
Q  5 tttctcttttcaatttgatccttcatctaaaatattttagttactattttatcctttttata 66  Q
    |||| ||||||||||| | |||||||  ||| ||||||| ||||||||||||| ||||||||    
T  35117048 tttcccttttcaattttacccttcattaaaagtattttatttactattttatcatttttata 35117109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 31086414 - 31086324
Alignment:
Q  49 tattttatcctttttatacaaatatttaaattagtaattaaaaaa-tagataaatctcattataatactctactacaatagaaacaatatt 138  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||    
T  31086414 tattttatcctttttataacaatatttaaattattaattaaaaaaatagataaatctcattaaaatactccactacaatagaaacaatatt 31086324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 32630885 - 32630749
Alignment:
Q  101 atctcattataatactctactacaatagaaacaatattatcttaaaaatatataaataaaatagacgattttgagttggattttttcattattcaaagta 200  Q
    |||| |||||||||||| |||||||||  ||||||||||   ||||||||| ||||  |||||   ||||||| ||| || |||||||||||||| | ||    
T  32630885 atcttattataatactccactacaatatgaacaatattactataaaaatatctaaaggaaatactagattttgggtt-gaatttttcattattcatatta 32630787  T
Q  201 tactgttaaacaaattttt-ctataatattgttatatt 237  Q
    |||| | |||||||||||| |||||||| |||||||||    
T  32630786 tactctaaaacaaatttttcctataataatgttatatt 32630749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 11290093 - 11290184
Alignment:
Q  2 ctttttctcttttcaatttgatccttcatctaaaatattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaa 93  Q
    ||||||||||||||||||| |   ||||| |||| ||||||| ||||||||||||||| ||||||  | |  |||||||| |||||||||||    
T  11290093 ctttttctcttttcaattttaggtttcatttaaagtattttatttactattttatcctatttataatattgcttaaattattaattaaaaaa 11290184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 45554978 - 45555036
Alignment:
Q  34 aaatattttagttactattttatcctttttataca-aatatttaaattagtaattaaaa 91  Q
    |||||||||| |||||||||||||||||||||| | | ||||||||||| |||||||||    
T  45554978 aaatattttatttactattttatcctttttataaatattatttaaattattaattaaaa 45555036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 11259178 - 11259241
Alignment:
Q  32 taaaatattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaaatag 96  Q
    |||||||||||| |||||||||||| ||||||||| | || ||||||||| |||| |||||||||    
T  11259178 taaaatattttatttactattttattctttttata-atatttttaaattattaatcaaaaaatag 11259241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 11259327 - 11259381
Alignment:
Q  183 ttttcattattcaaagtatactgttaaacaaatttttctataatattgttatatt 237  Q
    |||||||||||| || ||||||  ||||||||||||||||||||| ||| |||||    
T  11259327 ttttcattattccaattatactcataaacaaatttttctataataatgtaatatt 11259381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 31085454 - 31085350
Alignment:
Q  132 caatattatcttaaaaatatataaataaaatagacgattttgagttggattttttcattattcaaagtatactgttaaacaaatttttcta-taatattg 230  Q
    ||||||||||||||| |||||||||  |||||   |||||||  || ||||||| ||||||||||| |||||| |||||| |||| ||||| ||||| ||    
T  31085454 caatattatcttaaacatatataaaggaaatatgagattttggattagattttt-cattattcaaaatatactcttaaac-aattcttctattaataatg 31085357  T
Q  231 ttatatt 237  Q
    |||||||    
T  31085356 ttatatt 31085350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 5357157 - 5357371
Alignment:
Q  10 cttttcaatttgatccttcatctaaaatattttagttactattttatcctttttatacaaatattt-aaattagtaattaaaaaatagataaatctcatt 108  Q
    |||| |||||| | ||||||| |||||||||| | |||| |||||||||||||||||  ||||||| |||||| ||||||||||| | ||| | |||| |    
T  5357157 ctttccaattttacccttcat-taaaatattt-atttacaattttatcctttttataacaatattttaaattattaattaaaaaa-atatataactcact 5357253  T
Q  109 ataatactctactacaatagaaacaatattatcttaaaaatatataaataaaatagacgattttgagttggattttttcattattcaaagtatactgtta 208  Q
    | ||||| | | || ||||  |||||||||||||| ||||||||||||  |||||    |||||| |||||||||||| ||||||| || ||||   |||    
T  5357254 aaaataccccattataatatgaacaatattatcttgaaaatatataaaggaaatatgatattttgggttggatttttt-attattccaattatatcctta 5357352  T
Q  209 aacaaatttttctataata 227  Q
    || || |||||||||||||    
T  5357353 aataattttttctataata 5357371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 9059401 - 9059354
Alignment:
Q  190 tattcaaagtatactgttaaacaaatttttctataatattgttatatt 237  Q
    ||||| || |||||||||||||||||||||||||| || |||||||||    
T  9059401 tattccaattatactgttaaacaaatttttctatattaatgttatatt 9059354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 9633791 - 9633702
Alignment:
Q  3 tttttctcttttcaatttgatccttcatctaaaatattttagttactattttatcctttttatacaaatatttaaattagtaattaaaaa 92  Q
    |||||| ||||||||||| |  |||||| |||||| ||||| ||||||||||||||||| ||||  | |||||||| || ||||||||||    
T  9633791 tttttcccttttcaattttacacttcatttaaaattttttatttactattttatcctttatataatattatttaaactattaattaaaaa 9633702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 32640228 - 32640112
Alignment:
Q  2 ctttttctcttttcaatttgatccttcatctaaaatattttagttactattttatcctttttatacaaatatttaaattagtaatta-aaaaatagataa 100  Q
    ||||||| | ||||||||| |  ||| ||||||| ||||||| |||||| | ||| |||||||||  |||||||||| || |||||  |||||||||||     
T  32640228 ctttttcccgtttcaattttactctttatctaaagtattttatttactactctatactttttataataatatttaaactattaattgtaaaaatagatag 32640129  T
Q  101 atctcattataatactc 117  Q
    ||||||||| |||||||    
T  32640128 atctcattacaatactc 32640112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 49308194 - 49308297
Alignment:
Q  133 aatattatcttaaaaatatataaataaaatagacgattttgagttggattttttcattattcaaagtatactgttaaacaaatttttctataatattgtt 232  Q
    |||||||||||| |||||||||||  ||||| | |||||||||||||| | ||||||||||| || ||||   ||||||||||| | ||||||||  |||    
T  49308194 aatattatcttataaatatataaaggaaatacatgattttgagttgga-tctttcattattctaattataaccttaaacaaattatcctataataacgtt 49308292  T
Q  233 atatt 237  Q
    |||||    
T  49308293 atatt 49308297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 47017591 - 47017634
Alignment:
Q  71 tatttaaattagtaattaaaaaatagataaatctcattataata 114  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||    
T  47017591 tatttaaattattaattaaaaaatagttaaatctcattaaaata 47017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 38304776 - 38304834
Alignment:
Q  32 taaaatattttagttactattttatcctttttatacaaatatttaaattagtaattaaa 90  Q
    |||| ||||||| ||||||||||||| ||||||||  | ||||||||||| ||||||||    
T  38304776 taaactattttatttactattttatcttttttataatattatttaaattattaattaaa 38304834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 44341149 - 44341100
Alignment:
Q  57 cctttttatacaaatatttaaattagtaattaaaaaatagataaatctca 106  Q
    ||||||||||  ||||||||||||| ||||||| |||||| |||||||||    
T  44341149 cctttttataataatatttaaattattaattaataaatagttaaatctca 44341100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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