View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_low_28 (Length: 227)
Name: NF17915_low_28
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_low_28 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 1940429 - 1940651
Alignment:
| Q |
6 |
ataagtctcggacttggatcaagtgagatatggtgagacttattgatccaatgatgaaaaacaaacttgtgtatagtgcaacacctacctcacatgtgca |
105 |
Q |
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| T |
1940429 |
ataagtctcggacttagatcaagtgagatatggtgagacttattgatccaatgatgaaaaacaaacttgtgtatagtgcaacacctacctcacatgtgca |
1940528 |
T |
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| Q |
106 |
ccacaggactagcctgaattacaatatcagtatgcaattactcaaaatctcaactttttcctcaagattcaaacannnnnnnnnnaaacttggtatccag |
205 |
Q |
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| T |
1940529 |
ccataggactagcctgaattacaatatcagtatgcaattactcaaaatctcaactttttcctcaagattcaaacattttttttttaaactcggtatccag |
1940628 |
T |
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| Q |
206 |
a-ggtcgatacggtgaagattca |
227 |
Q |
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| T |
1940629 |
accgtcgatacggtgaagattca |
1940651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 1452904 - 1452970
Alignment:
| Q |
22 |
gatcaagtgagatatggtgagacttattgatccaatgatgaaaaacaaacttgtgtatagtgcaacac |
89 |
Q |
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| T |
1452904 |
gatcaagtgagatata-tgggacttattgatccaatgatggaaaagaaatttgtgcatggtgcaacac |
1452970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 8834964 - 8834913
Alignment:
| Q |
6 |
ataagtctcggacttggatcaagtgagatatggtgagacttattgatccaat |
57 |
Q |
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| T |
8834964 |
ataagtctcgccattggatcaagtgagatatgatgagactttttgatccaat |
8834913 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 50891252 - 50891322
Alignment:
| Q |
6 |
ataagtctcggacttggatcaagtgagatatggtgagacttattgatccaatgatgaaaaacaaacttgtg |
76 |
Q |
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| T |
50891252 |
ataagtcacagaattgaatcaaatgagatatgatgagattttttgatccaatggtgaaaaacaaatttgtg |
50891322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 6174141 - 6174198
Alignment:
| Q |
19 |
ttggatcaagtgagatatggtgagacttattgatccaatgatgaaaaacaaacttgtg |
76 |
Q |
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| T |
6174141 |
ttggatcgagtgagatatgatgggacttattgacccaatagtggaaaacaaacttgtg |
6174198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 56127430 - 56127474
Alignment:
| Q |
30 |
gagatatggtgagacttattgatccaatgatgaaaaacaaacttg |
74 |
Q |
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| T |
56127430 |
gagatatgatgagacttattgatccagtggcgaaaaacaaacttg |
56127474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 23967598 - 23967553
Alignment:
| Q |
23 |
atcaagtgagatatggtgagacttattgatccaatgatgaaaaaca |
68 |
Q |
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| T |
23967598 |
atcaaatgagatatgatgagacctattgatccaatggtgaaaaaca |
23967553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 2819011 - 2818968
Alignment:
| Q |
35 |
atggtgagacttattgatccaatgatgaaaaacaaacttgtgtat |
79 |
Q |
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| T |
2819011 |
atggtgagatttattgatccaatgatg-aaaactaacttgtgtat |
2818968 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 17735195 - 17735235
Alignment:
| Q |
41 |
agacttattgatccaatgatgaaaaacaaacttgtgtatag |
81 |
Q |
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| T |
17735195 |
agacttattgatccaattgtgaaaaacaaacttgtgcatag |
17735235 |
T |
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