View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17915_low_29 (Length: 227)

Name: NF17915_low_29
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17915_low_29
NF17915_low_29
[»] chr8 (2 HSPs)
chr8 (6-160)||(29005049-29005203)
chr8 (86-154)||(39108523-39108591)
[»] scaffold0250 (1 HSPs)
scaffold0250 (87-155)||(9039-9107)
[»] scaffold1372 (1 HSPs)
scaffold1372 (87-152)||(85-150)
[»] scaffold1308 (1 HSPs)
scaffold1308 (87-152)||(1391-1456)
[»] chr7 (1 HSPs)
chr7 (86-155)||(36827794-36827863)
[»] chr6 (2 HSPs)
chr6 (106-155)||(5604289-5604338)
chr6 (87-155)||(3159579-3159647)
[»] chr4 (1 HSPs)
chr4 (86-155)||(12799931-12800000)
[»] chr2 (1 HSPs)
chr2 (86-155)||(41542743-41542812)
[»] chr5 (1 HSPs)
chr5 (103-155)||(8234078-8234130)
[»] chr3 (1 HSPs)
chr3 (101-137)||(47495740-47495776)
[»] chr1 (1 HSPs)
chr1 (87-155)||(43949167-43949235)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 29005049 - 29005203
Alignment:
Q  6 acattgtaattgcgttaaacagcggagttgaaaaataagtatgtattatgtatatctatactatatatacaaaagtcagattaacttctgcctttagggt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29005049 acattgtaattgcgttaaacagcggagttgaaaaataagtatgtattatgtatatctatactatatatacaaaagtcagattaacttctgcctttagggt 29005148  T
Q  106 acatgttaagaaactaaaaaatagaaatattttctcaagttttgtgcattgtatg 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29005149 acatgttaagaaactaaaaaatagaaatattttctcaagttttgtgcattgtatg 29005203  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 39108523 - 39108591
Alignment:
Q  86 ttaacttctgcctttagggtacatgttaagaaactaaaaaatagaaatattttctcaagttttgtgcat 154  Q
    ||||||| ||||||||||| ||||||||||||||| ||||  ||||||||| ||| || ||||||||||    
T  39108523 ttaacttgtgcctttagggcacatgttaagaaactcaaaataagaaatattctctaaaattttgtgcat 39108591  T

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Target: scaffold0250 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 9039 - 9107
Alignment:
Q  87 taacttctgcctttagggtacatgttaagaaactaaaaaatagaaatattttctcaagttttgtgcatt 155  Q
    |||||| || |||||| | |||||||||||||| ||||| || ||||||| ||||||||||||| ||||    
T  9039 taacttgtgtctttagagcacatgttaagaaacaaaaaagtaaaaatattctctcaagttttgtacatt 9107  T

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Target: scaffold1372 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 150 - 85
Alignment:
Q  87 taacttctgcctttagggtacatgttaagaaactaaaaaatagaaatattttctcaagttttgtgc 152  Q
    |||||| |||| ||||||||||||||||| ||   ||||||||||||||||  |||| ||||||||    
T  150 taacttatgcccttagggtacatgttaaggaatccaaaaatagaaatatttcatcaaattttgtgc 85  T

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Target: scaffold1308 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1308
Description:

Target: scaffold1308; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 1456 - 1391
Alignment:
Q  87 taacttctgcctttagggtacatgttaagaaactaaaaaatagaaatattttctcaagttttgtgc 152  Q
    |||||| |||| ||||||||||||||||| ||   ||||||||||||||||  |||| ||||||||    
T  1456 taacttatgcccttagggtacatgttaaggaatccaaaaatagaaatatttcatcaaattttgtgc 1391  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 36827794 - 36827863
Alignment:
Q  86 ttaacttctgcctttagggtacatgttaagaaactaaaaaatagaaatattttctcaagttttgtgcatt 155  Q
    ||||||| |||| |||||| ||||||||||||||  ||||  ||||||||| ||| || |||||||||||    
T  36827794 ttaacttgtgcccttagggcacatgttaagaaacctaaaagaagaaatattctctaaaattttgtgcatt 36827863  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 5604338 - 5604289
Alignment:
Q  106 acatgttaagaaactaaaaaatagaaatattttctcaagttttgtgcatt 155  Q
    |||||||||| |||| || ||||||||||||  |||||||||||||||||    
T  5604338 acatgttaaggaactcaagaatagaaatattccctcaagttttgtgcatt 5604289  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 3159579 - 3159647
Alignment:
Q  87 taacttctgcctttagggtacatgttaagaaactaaaaaatagaaatattttctcaagttttgtgcatt 155  Q
    |||||| |||| |||||| ||||||||||||| | ||||| ||||||||| ||| ||  ||||||||||    
T  3159579 taacttgtgcccttagggcacatgttaagaaatttaaaaaaagaaatattctcttaaactttgtgcatt 3159647  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 12799931 - 12800000
Alignment:
Q  86 ttaacttctgcctttagggtacatgttaagaaactaaaaaatagaaatattttctcaagttttgtgcatt 155  Q
    ||||||| |||| |||||| ||||||||||||||| ||||  ||||| | ||||| || |||||||||||    
T  12799931 ttaacttatgcccttagggcacatgttaagaaacttaaaagaagaaacaatttctaaaattttgtgcatt 12800000  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 41542743 - 41542812
Alignment:
Q  86 ttaacttctgcctttagggtacatgttaagaaactaaaaaatagaaatattttctcaagttttgtgcatt 155  Q
    ||||||| |||| ||| || ||||||||||||||| ||||  ||||||||| ||| || |||||||||||    
T  41542743 ttaacttgtgcccttaaggcacatgttaagaaactcaaaagaagaaatattctctaaaattttgtgcatt 41542812  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 8234130 - 8234078
Alignment:
Q  103 ggtacatgttaagaaactaaaaaatagaaatattttctcaagttttgtgcatt 155  Q
    |||||||||||||||||| ||||  ||||||||| ||| || |||||||||||    
T  8234130 ggtacatgttaagaaactcaaaagaagaaatattctcttaaattttgtgcatt 8234078  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 47495740 - 47495776
Alignment:
Q  101 agggtacatgttaagaaactaaaaaatagaaatattt 137  Q
    |||| |||||||||| |||||||||||||||||||||    
T  47495740 agggcacatgttaagcaactaaaaaatagaaatattt 47495776  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 43949235 - 43949167
Alignment:
Q  87 taacttctgcctttagggtacatgttaagaaactaaaaaatagaaatattttctcaagttttgtgcatt 155  Q
    |||||| |||| |||||| ||||||||||||||  ||||  ||||||||| ||| || |||||||||||    
T  43949235 taacttgtgcccttagggcacatgttaagaaacccaaaagaagaaatattctctaaaattttgtgcatt 43949167  T

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