View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_low_4 (Length: 496)
Name: NF17915_low_4
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 38 - 492
Target Start/End: Original strand, 42730912 - 42731362
Alignment:
| Q |
38 |
atattgcatctttcattgattctaagtcaattctgactaatagttaaattacatcttcaacttttgactatttcttttctatgtaaaaagttagacaatc |
137 |
Q |
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| T |
42730912 |
atattgcatctttcattgattctgagtcaattctgactaatagttaaattacatcttcaacttttgactatttcttttctatgtaaaaagttagacaatc |
42731011 |
T |
|
| Q |
138 |
atgtattgtactgttgaattcagtgcatcaatacaataagatggaacagtttacattttgtcagattaagatgatttttctgatacagattactattagt |
237 |
Q |
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| T |
42731012 |
atgtattgtactgttgaattcagtgcatcaataaaataagatggaacagtttacattttgtcagattaagatgatttttctgatacagattactattagt |
42731111 |
T |
|
| Q |
238 |
ttatgacttttattttattaactaagcaagcaaatcatttctgttgcatttcttagtattaaatagttactgcataaaaatttacttactgtgtcagatg |
337 |
Q |
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| T |
42731112 |
ttatgacttttattttattaactaagcac----atcatttctgttgcatttcttagtattaaatagttactgcataaaaatttacttactgtgtcagatg |
42731207 |
T |
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| Q |
338 |
tgtatgagtatgagttgttaagcaaaaaatactttacatttgtttctataaatagaactgttaatgatttgaatcatgataggaaagttgcaaataattt |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42731208 |
tgtatgagtatgagttgttaagcaaaaaatactttacatttgtttctataaatagaactgttaatgatttgaatcatgataggaaagttgcaaataattt |
42731307 |
T |
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| Q |
438 |
caactgttagtaagtcttatcatgctgacaattgttcctactagtattatctacc |
492 |
Q |
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| T |
42731308 |
caactgttagtaagtcttatcatgctgacaattgttcctactagtactatctacc |
42731362 |
T |
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