View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_low_5 (Length: 491)
Name: NF17915_low_5
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 53 - 473
Target Start/End: Complemental strand, 71622 - 71205
Alignment:
| Q |
53 |
cctagtaattccacataaaactctcgaaactagttacaacaccattattaacaagtccatcatcaccaacacaacaaccatcttcttcttgtgttgtttg |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
71622 |
cctagtaattccacataaaactctcgaaactagttacaacaccattattaacaagtccatcatcaccaacacaacaaccatcttcttcttgtgttgtttg |
71523 |
T |
|
| Q |
153 |
tagccatgtcattggttgctgatacatcatccaagcatagtcttgtgcttgtgagtcaacatagacaaattcctctttcccaacatcatcataaccgttt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
71522 |
tagccatgtcattggttgctgatacatcatccaagcatagtcttgtgcttgtgagtcaacatagacaaattcctctttcccaacatcatcataaccgttt |
71423 |
T |
|
| Q |
253 |
tccaaagttggtagctcaataatctcactaagttcttcagaagtagctgacaagtctgctgatgaagacagagttttcgttgtcttcattaacaaacttg |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
71422 |
tccaaagttggtagctcaataatctcactaagttcttcagaagtagctgacaagtctgctgatgaagacagagtttttgttgtcttcattaacagacttg |
71323 |
T |
|
| Q |
353 |
ttgatgttgatatcgttgtcaacgaagatgttgacaacgatgacaatgatgaagaagaaggtgatgatagctcaaatttgctaatgtccatttgagctgc |
452 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
71322 |
ttgatgttgacatcgttgtcaacgaagatgttgacaacgatgaca---atgaagaagaagatgatgatagctcaaatttgccaatgtccatttgagctgc |
71226 |
T |
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| Q |
453 |
tttagccgccgcggcctgaac |
473 |
Q |
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| T |
71225 |
tttagccgccgcggcctgaac |
71205 |
T |
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