View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17915_low_6 (Length: 473)
Name: NF17915_low_6
Description: NF17915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17915_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 45073876 - 45073677
Alignment:
| Q |
20 |
gagaagctaaagaaggacttggttggtttgttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagcttattagtc |
119 |
Q |
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| T |
45073876 |
gagaagctgaagaaggacttggttggtttgttttatgggactgatcatggatcgaaagccgcgagtgagacaagagcggagatttttgagcttattagtc |
45073777 |
T |
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| Q |
120 |
agctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttc |
219 |
Q |
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| T |
45073776 |
agctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttc |
45073677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 286 - 466
Target Start/End: Complemental strand, 45073609 - 45073422
Alignment:
| Q |
286 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgctta-------cgttaacttagtttgtgttctgcagctaacaaactcatggttgga |
378 |
Q |
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| T |
45073609 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgcttattattgacgttaacttagtttgtgttctgcagctaacaaactcatggttgga |
45073510 |
T |
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| Q |
379 |
tttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
466 |
Q |
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| T |
45073509 |
tttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
45073422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 8880737 - 8880538
Alignment:
| Q |
20 |
gagaagctaaagaaggacttggttggtttgttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagcttattagtc |
119 |
Q |
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| T |
8880737 |
gagaagctgaagaaggacttggttggttccttttatgggactgctcgtggattgaaagcggcgagtgagacaagagcggagatttttgagcttattagtc |
8880638 |
T |
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| Q |
120 |
agctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaagcaaattcgttttactaactttc |
219 |
Q |
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| T |
8880637 |
agctcgaggctaagaatccaacccccgcttccactgatgctttgagtttgctcgatggaaaatggattcttgcgtaagcaaattcgttttactaactttc |
8880538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 286 - 466
Target Start/End: Complemental strand, 8880468 - 8880281
Alignment:
| Q |
286 |
gttagacaatgatttgtgtttggaagggaacttatcatgttctgcttac-------gttaactt-agtttgtgttctgcagctaacaaactcatggttgg |
377 |
Q |
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| T |
8880468 |
gttagacaatgatttgtgtttggaagggaa-ttctcatattctgcttattattaatgttaactttagcttgtgttctgcagctaacaaacttatagttgg |
8880370 |
T |
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| Q |
378 |
atttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
466 |
Q |
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| T |
8880369 |
atttattccgcaggtatacatcctatgcaggtttatttccattgttgtcaagcgggctactgccattactcgaggttgaagaattatct |
8880281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 8884839 - 8884662
Alignment:
| Q |
20 |
gagaagctaaagaaggacttggttggtttgttttatgggactgatcatggattgaaagccgcgagtgagacaagagcggagatttttgagcttattagtc |
119 |
Q |
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| T |
8884839 |
gagaagctgaagaaggcgttggttggttcgttttatgggactgatcgtggattgaaagcgacgagtgaaactagagctgagattgttgagcttattactc |
8884740 |
T |
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| Q |
120 |
agctcgaggctaagtttcccacccctgcttccactgatgccttgagtttgctcgatggaaaatggattctcgcgtaag |
197 |
Q |
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| T |
8884739 |
agctggaagctaagaatcccacacctgcttccactgatgccttgagtttgctcaatggaaaatggattcttgcgtaag |
8884662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 466
Target Start/End: Complemental strand, 8884201 - 8884081
Alignment:
| Q |
349 |
tgttctgcagctaacaaactcatggttggatttat---tccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccattt |
445 |
Q |
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| T |
8884201 |
tgttctgcagctaataaactcgtggtttgatttgtggttcttcaggtatacatcctttgccggtttatttccattgctttcgagcggactactgccatta |
8884102 |
T |
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| Q |
446 |
cttgaggttgaagaattatct |
466 |
Q |
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||| |||||||||| ||||| |
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| T |
8884101 |
cttacggttgaagaaatatct |
8884081 |
T |
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