View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17916_high_1 (Length: 531)

Name: NF17916_high_1
Description: NF17916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17916_high_1
NF17916_high_1
[»] chr1 (16 HSPs)
chr1 (17-517)||(41983829-41984328)
chr1 (199-286)||(41986125-41986212)
chr1 (18-64)||(20725982-20726028)
chr1 (26-63)||(962561-962598)
chr1 (18-63)||(18032287-18032332)
chr1 (18-63)||(33690159-33690204)
chr1 (18-63)||(37034936-37034981)
chr1 (18-67)||(44410708-44410757)
chr1 (24-63)||(24638702-24638741)
chr1 (28-63)||(42866278-42866313)
chr1 (28-63)||(44257770-44257805)
chr1 (28-63)||(46535334-46535369)
chr1 (18-69)||(49241636-49241687)
chr1 (29-63)||(3252226-3252260)
chr1 (27-65)||(45193266-45193304)
chr1 (18-63)||(3355400-3355445)
[»] chr3 (17 HSPs)
chr3 (18-64)||(35054767-35054813)
chr3 (29-66)||(2849333-2849370)
chr3 (18-63)||(53351171-53351216)
chr3 (32-68)||(37599945-37599981)
chr3 (28-64)||(39850694-39850730)
chr3 (27-63)||(51537256-51537292)
chr3 (28-63)||(10259262-10259297)
chr3 (27-62)||(11412559-11412594)
chr3 (29-63)||(11018705-11018739)
chr3 (29-63)||(42217230-42217264)
chr3 (29-63)||(44201109-44201143)
chr3 (29-63)||(55258153-55258187)
chr3 (28-65)||(23241930-23241967)
chr3 (34-67)||(26725548-26725581)
chr3 (27-64)||(29727736-29727773)
chr3 (28-65)||(30465154-30465191)
chr3 (30-63)||(41462424-41462457)
[»] scaffold0231 (1 HSPs)
scaffold0231 (28-69)||(11101-11142)
[»] chr5 (11 HSPs)
chr5 (28-69)||(27194840-27194881)
chr5 (27-65)||(6273126-6273164)
chr5 (26-61)||(13956932-13956967)
chr5 (29-64)||(14352007-14352042)
chr5 (28-63)||(35758035-35758070)
chr5 (28-63)||(40143904-40143939)
chr5 (29-63)||(18942249-18942283)
chr5 (18-63)||(6459707-6459752)
chr5 (30-63)||(17421303-17421336)
chr5 (30-63)||(32383958-32383991)
chr5 (27-63)||(389721-389757)
[»] chr8 (9 HSPs)
chr8 (18-65)||(18656682-18656729)
chr8 (24-63)||(32493249-32493288)
chr8 (28-65)||(19726781-19726818)
chr8 (18-63)||(36833904-36833949)
chr8 (18-65)||(3655855-3655902)
chr8 (28-63)||(14910095-14910130)
chr8 (28-63)||(41726426-41726461)
chr8 (28-63)||(42063462-42063497)
chr8 (29-63)||(36658515-36658549)
[»] chr2 (13 HSPs)
chr2 (18-64)||(3988704-3988750)
chr2 (18-63)||(35305354-35305399)
chr2 (27-63)||(16106782-16106818)
chr2 (28-64)||(24128752-24128788)
chr2 (24-63)||(16457812-16457851)
chr2 (28-63)||(17513020-17513055)
chr2 (28-63)||(29523951-29523986)
chr2 (30-64)||(7153436-7153470)
chr2 (29-63)||(21800752-21800786)
chr2 (17-65)||(6065568-6065616)
chr2 (27-63)||(10810625-10810661)
chr2 (27-63)||(29781416-29781452)
chr2 (28-64)||(39061989-39062025)
[»] scaffold0036 (1 HSPs)
scaffold0036 (28-65)||(51907-51944)
[»] chr7 (12 HSPs)
chr7 (18-63)||(36858133-36858178)
chr7 (28-64)||(11734310-11734346)
chr7 (27-62)||(10198308-10198343)
chr7 (28-63)||(14802028-14802063)
chr7 (28-63)||(15249020-15249055)
chr7 (24-63)||(16217069-16217108)
chr7 (24-63)||(34259338-34259377)
chr7 (28-63)||(45269518-45269553)
chr7 (27-61)||(5418899-5418933)
chr7 (18-63)||(31813488-31813533)
chr7 (18-63)||(46170641-46170686)
chr7 (31-63)||(1582155-1582187)
[»] chr6 (7 HSPs)
chr6 (18-63)||(22351302-22351347)
chr6 (18-63)||(29419818-29419863)
chr6 (28-63)||(24068265-24068300)
chr6 (28-63)||(30269593-30269628)
chr6 (29-63)||(6817290-6817324)
chr6 (18-63)||(23595691-23595736)
chr6 (28-68)||(13630198-13630238)
[»] chr4 (12 HSPs)
chr4 (18-63)||(4414415-4414460)
chr4 (18-63)||(11792384-11792429)
chr4 (18-63)||(12704714-12704759)
chr4 (18-63)||(25232729-25232774)
chr4 (18-63)||(29695490-29695535)
chr4 (18-66)||(23611595-23611643)
chr4 (27-63)||(54822047-54822083)
chr4 (30-65)||(55675418-55675453)
chr4 (30-64)||(6355040-6355074)
chr4 (29-63)||(8132791-8132825)
chr4 (27-64)||(28359742-28359779)
chr4 (26-63)||(44352087-44352124)
[»] scaffold0116 (1 HSPs)
scaffold0116 (27-63)||(7839-7875)
[»] scaffold0712 (1 HSPs)
scaffold0712 (29-63)||(4996-5030)
[»] scaffold0709 (1 HSPs)
scaffold0709 (29-63)||(5016-5050)
[»] scaffold0043 (1 HSPs)
scaffold0043 (30-63)||(64345-64378)
[»] scaffold0070 (1 HSPs)
scaffold0070 (28-64)||(12720-12756)


Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Original strand, 41983829 - 41984328
Alignment:
Q  17 tcagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgatcttagtcatctggttttaatcaatggattacaatgtttttatttatttatt 116  Q
    |||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||  |||||||||    
T  41983829 tcagtacccatgctgagttgatgaccgagccgagttttaaaactatgatcttagtcatttggttttaatcaatggtttacaatgttttt--ttatttatt 41983926  T
Q  117 tgccaacttaaactcttaattgtcacattttaatcaaatggtctcaaatgcacctactacagaacaaaatgattcctagaccgtagggaatcagggtcca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  41983927 tgccaacttaaactcttaattgtcacattttaatcaaatggtcacaaatgcacctactacagaacgacatgattcctagaccgtagggaatccgggtcca 41984026  T
Q  217 cttttgatgcagtcgagcattgcggagtgtccaatcaagattaaacggctcaaatttcaatcacacatttaattctaattacct-ccttttacatcacat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  41984027 cttttgatgcagtcgagcattgcggagtgtccaatcaagattaaacggctcaaatttcaatcacacatttaactctaattacctcccttttacatcacat 41984126  T
Q  316 ttttccttattgtagtaatataggcacatatatggttagggtgattaatacagcatttgtgaattaggnnnnnnncagtccagtaacatgaagaaataat 415  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  41984127 ttttctttattatagtaatataggcacatatatggttagggtgattaatacagcatttgtgaattaggaaaaaaacagtccagtaacatgaagaaataat 41984226  T
Q  416 tggtcatgttgggagaaattgttttttaatttgctatccttactaagtacagaatagtgaaatcaacattagtgaaggccttgttaaaaactatagatga 515  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41984227 tggtcatgttgggagaaagtgttttttaatttgctatccttactaagtacagaatagtgaaatcaacattagtgaaggccttgttaaaaactatagatga 41984326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 41986125 - 41986212
Alignment:
Q  199 gtagggaatcagggtccacttttgatgcagtcgagcattgcggagtgtccaatcaagattaaacggctcaaatttcaatcacacattt 286  Q
    |||| ||||| |||||||||||||| |||||||||||||  |||| || |||||||||||| || || ||||||||||||| ||||||    
T  41986125 gtagagaatccgggtccacttttgacgcagtcgagcattatggagcgttcaatcaagattagaccgcccaaatttcaatcagacattt 41986212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 20726028 - 20725982
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  20726028 cagtatccatgtcgagtcgatgaccgagccgagttttaaaactatga 20725982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 962561 - 962598
Alignment:
Q  26 atgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||||| |||||||||||||||||||    
T  962561 atgccgagtcgatgaccgagccgagttttaaaactatg 962598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 18032332 - 18032287
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||||    
T  18032332 cagtacccatgccgagtcgacgaccgagccgagttttaaaactatg 18032287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 33690204 - 33690159
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||    
T  33690204 cagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 33690159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 37034936 - 37034981
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||    
T  37034936 cagtacccatgccgagtcgatgatcgagccgagttttaaaactatg 37034981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 44410757 - 44410708
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgatct 67  Q
    ||||| || |||||||||||||||||  ||||||||||||||||||||||    
T  44410757 cagtacccttgccgagtcgatgaccgaaccgagttttaaaactatgatct 44410708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 24638741 - 24638702
Alignment:
Q  24 ccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  24638741 ccatgccgagtcgatgaccgagctgagttttaaaactatg 24638702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 42866313 - 42866278
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  42866313 gccgagtcgatgaccgagccgagttttaaaactatg 42866278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 44257805 - 44257770
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  44257805 gccgagtcgatgaccgagccgagttttaaaactatg 44257770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 46535334 - 46535369
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  46535334 gccgagtcgatgaccgagccgagttttaaaactatg 46535369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 49241687 - 49241636
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgatctta 69  Q
    |||||||| || ||| |||||||||| ||||| |||||||||||||||||||    
T  49241687 cagtatccctgtcgaatcgatgaccgagccgaattttaaaactatgatctta 49241636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 3252260 - 3252226
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  3252260 ccgagtcgatgaccgagccgagttttaaaactatg 3252226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 45193266 - 45193304
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactatgat 65  Q
    |||||||||||||| || |||||||||||||||||||||    
T  45193266 tgccgagtcgatgatcgagccgagttttaaaactatgat 45193304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 3355445 - 3355400
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||  |||||||||||||||| ||||| |||||||||||||    
T  3355445 cagtatccccgccgagtcgatgaccgagccgaattttaaaactatg 3355400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 35054767 - 35054813
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  35054767 cagtacccatgccgagtcgatgaccgagccgagttttaaaactatga 35054813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 2849333 - 2849370
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatgatc 66  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  2849333 ccgagtcgatgaccgagccgagttttaaaactatgatc 2849370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 53351216 - 53351171
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||    
T  53351216 cagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 53351171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 37599945 - 37599981
Alignment:
Q  32 agtcgatgaccgcgccgagttttaaaactatgatctt 68  Q
    |||||||||||| ||||||||||||||||||||||||    
T  37599945 agtcgatgaccgagccgagttttaaaactatgatctt 37599981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 39850730 - 39850694
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    |||||||||||||||| ||||||||||||||||||||    
T  39850730 gccgagtcgatgaccgagccgagttttaaaactatga 39850694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 51537256 - 51537292
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||||| |||||||||||||||||||    
T  51537256 tgccgagtcgatgaccgagccgagttttaaaactatg 51537292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 10259262 - 10259297
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  10259262 gccgagtcgatgaccgagccgagttttaaaactatg 10259297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 11412559 - 11412594
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactat 62  Q
    ||||||||||||||||| ||||||||||||||||||    
T  11412559 tgccgagtcgatgaccgagccgagttttaaaactat 11412594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 11018739 - 11018705
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  11018739 ccgagtcgatgaccgagccgagttttaaaactatg 11018705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 42217230 - 42217264
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  42217230 ccgagtcgatgaccgagccgagttttaaaactatg 42217264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 44201143 - 44201109
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  44201143 ccgagtcgatgaccgagccgagttttaaaactatg 44201109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 55258153 - 55258187
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  55258153 ccgagtcgatgaccgagccgagttttaaaactatg 55258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 23241930 - 23241967
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatgat 65  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  23241930 gccgagtcgatgaccgagccgaattttaaaactatgat 23241967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 26725581 - 26725548
Alignment:
Q  34 tcgatgaccgcgccgagttttaaaactatgatct 67  Q
    |||||||||| |||||||||||||||||||||||    
T  26725581 tcgatgaccgagccgagttttaaaactatgatct 26725548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 29727773 - 29727736
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  29727773 tgccgaatcgatgaccgagccgagttttaaaactatga 29727736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 30465154 - 30465191
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatgat 65  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  30465154 gccgagtcgatgaccgagccgaattttaaaactatgat 30465191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 41462424 - 41462457
Alignment:
Q  30 cgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||| |||||||||||||||||||    
T  41462424 cgagtcgatgaccgagccgagttttaaaactatg 41462457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 11101 - 11142
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatgatctta 69  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  11101 gccgagtcgatgaccgagccgagttttaaaactatgatctta 11142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 27194840 - 27194881
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatgatctta 69  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  27194840 gccgagtcgatgaccgagccgagttttaaaactatgatctta 27194881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 6273164 - 6273126
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactatgat 65  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  6273164 tgccgagtcgatgaccgagccgagttttaaaactatgat 6273126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 13956967 - 13956932
Alignment:
Q  26 atgccgagtcgatgaccgcgccgagttttaaaacta 61  Q
    |||||||||||||||||| |||||||||||||||||    
T  13956967 atgccgagtcgatgaccgagccgagttttaaaacta 13956932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 14352007 - 14352042
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    ||||||||||||||| ||||||||||||||||||||    
T  14352007 ccgagtcgatgaccgagccgagttttaaaactatga 14352042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 35758070 - 35758035
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  35758070 gccgagtcgatgaccgagccgagttttaaaactatg 35758035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 40143939 - 40143904
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  40143939 gccgagtcgatgaccgagccgagttttaaaactatg 40143904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 18942283 - 18942249
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  18942283 ccgagtcgatgaccgagccgagttttaaaactatg 18942249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 6459752 - 6459707
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| |||||||||||||| ||||| || ||||||||||||||||    
T  6459752 cagtacccatgccgagtcgacgaccgagctgagttttaaaactatg 6459707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 17421336 - 17421303
Alignment:
Q  30 cgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||| |||||||||||||||||||    
T  17421336 cgagtcgatgaccgagccgagttttaaaactatg 17421303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 32383958 - 32383991
Alignment:
Q  30 cgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||| |||||||||||||||||||    
T  32383958 cgagtcgatgaccgagccgagttttaaaactatg 32383991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 389721 - 389757
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||| |||||||||| |||||||||||||||||||    
T  389721 tgccgaatcgatgaccgagccgagttttaaaactatg 389757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 18656682 - 18656729
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 65  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||    
T  18656682 cagtacccctgccgagtcgatgaccgagccgagttttaaaactatgat 18656729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 32493249 - 32493288
Alignment:
Q  24 ccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  32493249 ccatgccgagtcgatgaccgagccgagttttaaaactatg 32493288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 19726781 - 19726818
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatgat 65  Q
    |||||||||||||||| |||||||||||||||||||||    
T  19726781 gccgagtcgatgaccgagccgagttttaaaactatgat 19726818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 36833949 - 36833904
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||    
T  36833949 cagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 36833904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 3655902 - 3655855
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 65  Q
    ||||||||  |||||||||||||||| ||||| |||||||||||||||    
T  3655902 cagtatccccgccgagtcgatgaccgagccgaattttaaaactatgat 3655855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 14910130 - 14910095
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  14910130 gccgagtcgatgaccgagccgagttttaaaactatg 14910095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 41726426 - 41726461
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  41726426 gccgagtcgatgaccgagccgagttttaaaactatg 41726461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 42063497 - 42063462
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  42063497 gccgagtcgatgaccgagccgagttttaaaactatg 42063462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 36658549 - 36658515
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  36658549 ccgagtcgatgaccgagccgagttttaaaactatg 36658515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 3988750 - 3988704
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  3988750 cagtatccctgccgagtcaatgaccgagccgagttttaaaactatga 3988704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 35305354 - 35305399
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||    
T  35305354 cagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 35305399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 16106782 - 16106818
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||||| |||||||||||||||||||    
T  16106782 tgccgagtcgatgaccgagccgagttttaaaactatg 16106818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 24128788 - 24128752
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    |||||||||||||||| ||||||||||||||||||||    
T  24128788 gccgagtcgatgaccgagccgagttttaaaactatga 24128752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 16457812 - 16457851
Alignment:
Q  24 ccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  16457812 ccatgccgaatcgatgaccgagccgagttttaaaactatg 16457851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 17513055 - 17513020
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  17513055 gccgagtcgatgaccgagccgagttttaaaactatg 17513020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 29523951 - 29523986
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  29523951 gccgagtcgatgaccgagccgagttttaaaactatg 29523986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 7153470 - 7153436
Alignment:
Q  30 cgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    |||||||||||||| ||||||||||||||||||||    
T  7153470 cgagtcgatgaccgagccgagttttaaaactatga 7153436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 21800752 - 21800786
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  21800752 ccgagtcgatgaccgagccgagttttaaaactatg 21800786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 6065568 - 6065616
Alignment:
Q  17 tcagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgat 65  Q
    |||||| || |||||| ||||||||||  ||||||||||||||||||||    
T  6065568 tcagtacccctgccgaatcgatgaccggaccgagttttaaaactatgat 6065616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 10810625 - 10810661
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||| || |||||||||||||||||||    
T  10810625 tgccgagtcgatgatcgagccgagttttaaaactatg 10810661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 29781452 - 29781416
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  29781452 tgccgagtcgaagaccgagccgagttttaaaactatg 29781416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 39061989 - 39062025
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  39061989 gccgagtcgatgaccgagccgaattttaaaactatga 39062025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 51944 - 51907
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatgat 65  Q
    |||||||||||||||| |||||||||||||||||||||    
T  51944 gccgagtcgatgaccgagccgagttttaaaactatgat 51907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 36858178 - 36858133
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||    
T  36858178 cagtatccccgccgagtcgatgaccgagccgagttttaaaactatg 36858133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 11734310 - 11734346
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11734310 gccgagtcgatgaccgagccgagttttaaaactatga 11734346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 10198343 - 10198308
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactat 62  Q
    ||||||||||||||||| ||||||||||||||||||    
T  10198343 tgccgagtcgatgaccgagccgagttttaaaactat 10198308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 14802028 - 14802063
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  14802028 gccgagtcgatgaccgagccgagttttaaaactatg 14802063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 15249020 - 15249055
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  15249020 gccgagtcgatgaccgagccgagttttaaaactatg 15249055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 16217069 - 16217108
Alignment:
Q  24 ccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  16217069 ccatgctgagtcgatgaccgagccgagttttaaaactatg 16217108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 34259338 - 34259377
Alignment:
Q  24 ccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  34259338 ccatgccgagtcgacgaccgagccgagttttaaaactatg 34259377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 45269518 - 45269553
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  45269518 gccgagtcgatgaccgagccgagttttaaaactatg 45269553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 5418933 - 5418899
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaacta 61  Q
    ||||||||||||||||| |||||||||||||||||    
T  5418933 tgccgagtcgatgaccgagccgagttttaaaacta 5418899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 31813533 - 31813488
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| || ||||||||||||||||| | |||||||||||||||||    
T  31813533 cagtacccctgccgagtcgatgaccgagtcgagttttaaaactatg 31813488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 46170686 - 46170641
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||| ||| ||||||||||||||||| ||||| |||||||||||||    
T  46170686 cagtgtccctgccgagtcgatgaccgagccgaattttaaaactatg 46170641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 1582187 - 1582155
Alignment:
Q  31 gagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||| |||||||||||||||||||    
T  1582187 gagtcgatgaccgagccgagttttaaaactatg 1582155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 22351302 - 22351347
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||    
T  22351302 cagtatccccgccgagtcgatgaccgagccgagttttaaaactatg 22351347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 29419818 - 29419863
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||    
T  29419818 cagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 29419863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 24068265 - 24068300
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  24068265 gccgagtcgatgaccgagccgagttttaaaactatg 24068300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 30269628 - 30269593
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||||| |||||||||||||||||||    
T  30269628 gccgagtcgatgaccgagccgagttttaaaactatg 30269593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 6817324 - 6817290
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  6817324 ccgagtcgatgaccgagccgagttttaaaactatg 6817290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 23595736 - 23595691
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| || |||||||||||| |||| |||||||||||||||||||    
T  23595736 cagtacccctgccgagtcgatcaccgagccgagttttaaaactatg 23595691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 13630238 - 13630198
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatgatctt 68  Q
    |||||||||||||||| |||||||||||||| |||| ||||    
T  13630238 gccgagtcgatgaccgagccgagttttaaaaatatgctctt 13630198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 4414460 - 4414415
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||    
T  4414460 cagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 4414415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 11792429 - 11792384
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||    
T  11792429 cagtatccccgccgagtcgatgaccgagccgagttttaaaactatg 11792384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 12704714 - 12704759
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||    
T  12704714 cagtacccatgcctagtcgatgaccgagccgagttttaaaactatg 12704759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 25232729 - 25232774
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||    
T  25232729 cagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 25232774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 29695490 - 29695535
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||||    
T  29695490 cagtatctatgtcgagtcgatgaccgagccgagttttaaaactatg 29695535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 23611595 - 23611643
Alignment:
Q  18 cagtatccatgccgagtcgatgaccgcgccgagttttaaaactatgatc 66  Q
    ||||||||  ||||||||||||||||  |||||||||||||||||||||    
T  23611595 cagtatccccgccgagtcgatgaccgaaccgagttttaaaactatgatc 23611643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 54822083 - 54822047
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||||| |||||||||||||||||||    
T  54822083 tgccgagtcgatgaccgagccgagttttaaaactatg 54822047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 55675453 - 55675418
Alignment:
Q  30 cgagtcgatgaccgcgccgagttttaaaactatgat 65  Q
    |||||||||||||| |||||||||||||||||||||    
T  55675453 cgagtcgatgaccgagccgagttttaaaactatgat 55675418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 6355040 - 6355074
Alignment:
Q  30 cgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    |||||||||||||| ||||||||||||||||||||    
T  6355040 cgagtcgatgaccgagccgagttttaaaactatga 6355074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 8132825 - 8132791
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  8132825 ccgagtcgatgaccgagccgagttttaaaactatg 8132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 28359742 - 28359779
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  28359742 tgccgagtcaatgaccgagccgagttttaaaactatga 28359779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 44352124 - 44352087
Alignment:
Q  26 atgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  44352124 atgccgagtcgatgaccgaaccgagttttaaaactatg 44352087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 7875 - 7839
Alignment:
Q  27 tgccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7875 tgccgagtcgatgaccgagccgagttttaaaactatg 7839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 4996 - 5030
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  4996 ccgagtcgatgaccgagccgagttttaaaactatg 5030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 5016 - 5050
Alignment:
Q  29 ccgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    ||||||||||||||| |||||||||||||||||||    
T  5016 ccgagtcgatgaccgagccgagttttaaaactatg 5050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 64378 - 64345
Alignment:
Q  30 cgagtcgatgaccgcgccgagttttaaaactatg 63  Q
    |||||||||||||| |||||||||||||||||||    
T  64378 cgagtcgatgaccgagccgagttttaaaactatg 64345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 12756 - 12720
Alignment:
Q  28 gccgagtcgatgaccgcgccgagttttaaaactatga 64  Q
    |||||||||||||||| | ||||||||||||||||||    
T  12756 gccgagtcgatgaccgagtcgagttttaaaactatga 12720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University