View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17916_high_11 (Length: 266)
Name: NF17916_high_11
Description: NF17916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17916_high_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 8804511 - 8804259
Alignment:
| Q |
18 |
ggatgaatcaagagaagatagctcaattgaacttagatgtggctttggtgatacacgaatatttttagaaaaaacaaaagttgtatgtgatgacatgtca |
117 |
Q |
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| T |
8804511 |
ggatgaatcaagagaagatagctcaattgaacttagatgtggctttggtgatacacgaatatttttagaaaaaacaaaagttgcatgtgatgacatgtca |
8804412 |
T |
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| Q |
118 |
tctaatattatttctag-ttttttcttaatcagtttagcagacaattgag----tatataggagttttagagaaatttctcatgatttagtggacatttt |
212 |
Q |
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| T |
8804411 |
tctaatattatttatagttttttttttaatcagtttagtagacaattgagtcattatataggagttttagagaaatttctcatg-tttagtggacatttt |
8804313 |
T |
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| Q |
213 |
gtaatgtttttaattcagtcatgtaattttttatagggtcttttgattcctttt |
266 |
Q |
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| T |
8804312 |
gtaatgtttttaattcagtcatgtaaattttcatagggtcttttgagtcctttt |
8804259 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 12881436 - 12881369
Alignment:
| Q |
174 |
gagttttagagaaatttctcatgatttagtggacattttgtaatgtttttaattc-agtcatgtaatt |
240 |
Q |
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| T |
12881436 |
gagttttagagaagttactcatggtttaagggacattttataatgtttttaaatcgagtcatgtaatt |
12881369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 17617367 - 17617442
Alignment:
| Q |
167 |
tatataggagttttagagaaatttctcatgatttagtggacattttgtaatgtttttaattcagtcatgtaatttt |
242 |
Q |
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| T |
17617367 |
tatagaggagttttagagaattttctcatggtttaagggccttttagtattgttttcaattgagtcatgtaatttt |
17617442 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 13248476 - 13248528
Alignment:
| Q |
170 |
ataggagttttagagaaatttctcatgatttagtggacattttgtaatgtttt |
222 |
Q |
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| T |
13248476 |
ataggagttttagagaagtttctcatgaattaagagacaatttgtaatgtttt |
13248528 |
T |
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