View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17916_high_2 (Length: 526)
Name: NF17916_high_2
Description: NF17916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17916_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Complemental strand, 2878557 - 2878111
Alignment:
| Q |
14 |
agacaagggaacaaaagttgaacaaggaagccaataataaaagtcaatgggtctagatccattagaatgataaatatgataatggtgcacgcacaacaag |
113 |
Q |
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| T |
2878557 |
agacaagggaacaaaagttgaacaaggaagccaataataagagtcaatgggtctagatcctttagaatgataaatatgataatggtgcacgcacaacaag |
2878458 |
T |
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| Q |
114 |
gtttagtgtcgatggattcaagtatggttaaagttgaagttgacattttattcatgatgttactaattgtttgttactatatcaccagaaaatgcctcct |
213 |
Q |
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| T |
2878457 |
gtttag-gtcgatggattcaagtatggttaaagttaaagttgacattttattcatgatgttactaattgtttgttacgatatcaccagaaaatgcctcct |
2878359 |
T |
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| Q |
214 |
cctttaattatgtttaatgggcgcgacattaccgttggtaaa-tagtagtctcaccattaatccatt-tgtagaaaggtcaatgccacttgtagattgga |
311 |
Q |
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| T |
2878358 |
cctttaattatgtttaatgggcagaacattaccgttggcaaaatagtagtctcaccattaatccaatgtgtagaaaggtcaatgccacttgtagattgga |
2878259 |
T |
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| Q |
312 |
gcatatagcaatcttatgtttttgtggttagtgcatttgtagtgtgaccacttaacttaatagtaagtcgcaatccattgatggattcataattcattca |
411 |
Q |
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| T |
2878258 |
gcatatagcaatcttatgtttttgtggttagtgcatttgttgtgtgaccacttaacttaatagaaagtcgcaatccattgatggattcataattcattca |
2878159 |
T |
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| Q |
412 |
tggtgtaatatgcaccacattcacttgtgatcaattattttgtattat |
459 |
Q |
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| T |
2878158 |
tggtgtaatatgcaccacattcacttgtgatcaattattttgtattat |
2878111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 507
Target Start/End: Complemental strand, 2878053 - 2878020
Alignment:
| Q |
474 |
tgtatataagcggaacatctaaaataaacacctc |
507 |
Q |
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| T |
2878053 |
tgtatataggcggaacatctaaaataaacacctc |
2878020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 8551373 - 8551431
Alignment:
| Q |
26 |
aaaagttgaacaaggaagccaataataaaagtcaatgggtctagatccattagaatgata |
85 |
Q |
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| T |
8551373 |
aaaagatgaacaagggaccca-taataaaattcaatgggtctagatcctttagaatgata |
8551431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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