View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17916_high_4 (Length: 462)
Name: NF17916_high_4
Description: NF17916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17916_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 4 - 370
Target Start/End: Original strand, 36513803 - 36514169
Alignment:
| Q |
4 |
gtgatatttctcatgacgtccgtttatgagattgatataaacaagagaatccgagcagcaaactaactccacaaaccccaaatctttagttataatcaac |
103 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36513803 |
gtgatatttctcctgacgtccgtttatgagattgatataaacaagagaatccgagcagcaaactaactccacaaaccctaaatctttagttataatcaac |
36513902 |
T |
|
| Q |
104 |
ccatggtaaatagcaaaaagttcagcaagaataatttcatacgaacccggaatgaaacctgaaaagatggataagaagaagccaacattgtttcttaaaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36513903 |
ccatggtaaatagcaaaaagttcagcaagaataatttcatacgagcccggaataaaacctgaaaagatggataagaagaagccaacattgtttcttaaaa |
36514002 |
T |
|
| Q |
204 |
ttcctccaaaccttgatctgatgggagagtcgtgataactaccatccacgttaataatagcaaaagtctgattattgttgttccatttaaccaaacgatc |
303 |
Q |
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| T |
36514003 |
tttctccaaaccttgatctgatgggagagtcgtgataactaccatccacgttaataatagcagaagtgtgatcattgttgttctatttaaccaaacgatc |
36514102 |
T |
|
| Q |
304 |
aactagtgcaacagaaaacagtggttcaaaagctggatttaattacctcaactgtgttatatatgtt |
370 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
36514103 |
aactagtgcagcagaaaacagtggttcaaaagctggatttaattacctcaaccgagttatatatgtt |
36514169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 5 - 318
Target Start/End: Complemental strand, 6313321 - 6313015
Alignment:
| Q |
5 |
tgatatttctcatgacgtccgtttatgagattgatataaacaagagaatccgagcagcaaactaactccacaaaccccaaatctttagttataatcaacc |
104 |
Q |
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|||||| |||| || || ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||| | ||||||||||| |
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| T |
6313321 |
tgatatatctcttggcggccgttgatgagattgatacaaacaagagaatccgagtagcaaactaactccacaaaatccaaattttttgctataatcaacc |
6313222 |
T |
|
| Q |
105 |
catggtaaatagcaaaaagttcagcaagaataatttcatacgaacccggaatgaaacctgaaaagatggataagaagaagccaacattgtttcttaaaat |
204 |
Q |
| |
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|||||||||||||| |||||| |||||||||||| |||| | | |||||||||||||||| ||||||||||||||||||| ||| | ||||| |
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| T |
6313221 |
catggtaaatagcataaagtttagcaagaataatatcat------ctgaaatgaaacctgaaaaggcaaataagaagaagccaacattatttttcaaaat |
6313128 |
T |
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| Q |
205 |
tcctccaaaccttgatctgatgggagagtcgtgataactaccatccacgttaataatagcaaaagtctgattattgttgttccatttaaccaaacgatca |
304 |
Q |
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||||| ||||| |||| |||||||||| ||||| | |||||||||| ||||| |||| | ||||| ||||||||| ||||||||||||| ||||||||| |
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| T |
6313127 |
tcctctaaacccagatcggatgggagagccgtgacagctaccatccaagttaaaaataac-aaagtgtgattattgctgttccatttaacgaaacgatca |
6313029 |
T |
|
| Q |
305 |
actagtgcaacaga |
318 |
Q |
| |
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|| ||||| |||| |
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| T |
6313028 |
gctggtgcagcaga |
6313015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 23 - 446
Target Start/End: Original strand, 31010203 - 31010624
Alignment:
| Q |
23 |
ccgtttatgagattgatataaacaagagaatccgagcagcaaactaactccacaaaccccaaatctttagttataatcaacccatggtaaatagcaaaaa |
122 |
Q |
| |
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||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||| || || ||| ||||||||||| ||||||| ||| |
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| T |
31010203 |
ccgttgatgagcttgatgcaaacaagagaatccgagtagcaaactaactccacaaaacccaaattttgagctatgatcaacccatgataaatagttgaaa |
31010302 |
T |
|
| Q |
123 |
gttcagcaagaataatttcatacgaacccggaatgaaacctgaaaagatggataagaagaagccaacattgtttcttaaaattcctccaaaccttgatct |
222 |
Q |
| |
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|||||||||| || || |||| ||| | | |||||||| |||||| | |||||| ||| || ||||||||| | ||||||||| |||| ||||| |
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| T |
31010303 |
gttcagcaagcat-atatcatctgaaacaaggatgaaaccagaaaaggcagttaagaaaaagtcataattgtttctcagaattcctccgaaccaggatct |
31010401 |
T |
|
| Q |
223 |
gatgggagagtcgtgataactaccatccacgttaataatagcaaaagtctgattattgttgttccatttaaccaaacgatcaactagtgcaacagaaaac |
322 |
Q |
| |
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||||||| | ||| |||||||||||||||||||| |||| || |||| || ||||| || ||||||||||||||||||||| || ||||| || | ||| |
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| T |
31010402 |
gatgggacaaccgtaataactaccatccacgttaagaataacacaagtgtggttattattattccatttaaccaaacgatcagctggtgcagca-ataac |
31010500 |
T |
|
| Q |
323 |
agtggttcaaaagctggatttaattacctcaactgtgttatatatgttgacaacaacttgtagtaaaggccagatgttgttgctgaaacacatagaattt |
422 |
Q |
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| || |||| || ||||||||| ||||||| ||||||||||| || ||| || | ||||||| |||||||| |||||||||||||||||| |
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| T |
31010501 |
aagagtcaaaaaactagatttaattgcctcaaccaaattatatatgtttgcagcaaggtgatgccaaggccaaatgttgttactgaaacacatagaattt |
31010600 |
T |
|
| Q |
423 |
ctatggcgccaagaccaccaaact |
446 |
Q |
| |
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|||| |||||||||||| ||||| |
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| T |
31010601 |
ttatgacgccaagaccactaaact |
31010624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 427
Target Start/End: Complemental strand, 24303651 - 24303255
Alignment:
| Q |
29 |
atgagattgatataaacaagagaatccgagcagcaaactaactccacaaaccccaaatctttagttataatcaacccatggtaaatagcaaaaagttcag |
128 |
Q |
| |
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||||||||||| |||||||||||| ||| ||||||||||| ||||||| ||||||| | || ||| ||||| | |||||||||||| |||||| || |
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| T |
24303651 |
atgagattgatgcaaacaagagaata-gagtagcaaactaaccccacaaaacccaaatttcgagctatgatcaatcaatggtaaatagccgaaagtttag |
24303553 |
T |
|
| Q |
129 |
caagaataatttcatacgaacccggaatgaaacctgaaaagatggataagaagaagccaacattgtttcttaaaattcctccaaaccttgatctgatggg |
228 |
Q |
| |
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|||| ||||| | || ||||| || ||||||||||| ||| | |||||| || || || ||||| | | |||||| || |||| ||||||||||| |
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| T |
24303552 |
caagcataatataatctgaacctgggatgaaacctgataaggcagctaagaaaaactcatcactgtttttcagaattcccccgaacccggatctgatggg |
24303453 |
T |
|
| Q |
229 |
agagtcgtgataactaccatccacgttaataatagcaaaagtctgattattgttgttccatttaaccaaacgatcaactagtgcaacagaaaacagtggt |
328 |
Q |
| |
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| T |
24303452 |
agaaccgtgacaactaccatccacgttaagaataacacaagtgtggttattattattccatttaaccaaacgaccagctggagcagca-ttaacatgagt |
24303354 |
T |
|
| Q |
329 |
tcaaaagctggatttaattacctcaactgtgttatatatgttgacaacaacttgtagtaaaggccagatgttgttgctgaaacacatagaatttctatg |
427 |
Q |
| |
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| ||||||| |||||||||||||||| || ||||||||||| || ||| || | ||| ||| |||| ||||||||||||||||||||||||||| |
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| T |
24303353 |
tgaaaagctagatttaattacctcaattgaattatatatgtttgcagcaaggtgatgccaagaccaaatgtcgttgctgaaacacatagaatttctatg |
24303255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 48318161 - 48318351
Alignment:
| Q |
23 |
ccgtttatgagattgatataaacaagagaatccgagcagcaaactaactccacaaaccccaaatctttagttataatcaacccatggtaaatagcaaaaa |
122 |
Q |
| |
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||||| |||||||||||| ||| | ||||||||||| ||||||||||||||| ||| ||||||| || || ||| ||||||||||| ||||||| ||| |
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| T |
48318161 |
ccgttgatgagattgatacaaaga-gagaatccgagtagcaaactaactccataaaacccaaattttgagctatgatcaacccatgataaatagtcgaaa |
48318259 |
T |
|
| Q |
123 |
gttcagcaagaataatttcatacgaacccggaatgaaacctgaaaagatggataagaagaagccaacattgtttcttaaaattcctccaaac |
214 |
Q |
| |
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||||||||| ||||| |||| ||||||| || ||||| |||||| ||||| || || ||| || | ||||| |||||||| |||||| |
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| T |
48318260 |
gttcagcaaaaataacatcatctgaacccgtgataaaaccagaaaaggctgataaaaaaaaaccatcactatttctcaaaattcccccaaac |
48318351 |
T |
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