View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17916_high_9 (Length: 293)
Name: NF17916_high_9
Description: NF17916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17916_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 19731970 - 19731704
Alignment:
| Q |
9 |
caaaggtgagatacaaaaacctaagtactaagtctaaggcaatataacctctatcaattgaaaacacataaaaaagcaaatcaataattgaaacacagtt |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19731970 |
caaaagtgagatacaaaaacctaagtactaagtctaaggcaatataacctctatcaattgaaaacacataaaaaagcaaatcaataactgaaacacagtt |
19731871 |
T |
|
| Q |
109 |
ttcttctatacaatgtgagaaatgtaagttacaaaactgatgtgttactcggtgtaccacctggttcaactaactggctctaataacgtccgatactctg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19731870 |
ttcttctatacaatgtgagaaatgtaagttacaaaactgatgtgttactcggtgtaccacctggttcaactaactggctctaataatgtccgatactctg |
19731771 |
T |
|
| Q |
209 |
tttctgtaatcgattttatgccataagggtcaggagtaatgtcctctgtatcttcctgcggaggaaa |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19731770 |
tttctgtaatcgattttatgccataagggtcaggagtaatgtcctctgtatcttcctgcggaggaaa |
19731704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University