View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17916_low_12 (Length: 238)
Name: NF17916_low_12
Description: NF17916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17916_low_12 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 21045 - 20825
Alignment:
| Q |
1 |
tctataataactatctaacagaaaaatgagacattaataaaattcattactatgaaagcacagcgaatataatggtggaccgcaaaaacaacctttttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21045 |
tctataataactatctaacagaaaaatgagacattaataaaattcattactatgaaagcacaatgaatataatggtggaccgcaaaaacaacctttttgc |
20946 |
T |
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| Q |
101 |
cacgagacttccaatcttctgaactactagcaactttcattgcctgagcaagggaatcatccagttctttgaattgtacaagatgcttcattttccaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20945 |
cacgagacttccaatcttctgaactactagcaactttcattgcctgagaaagggaatcatccagttctttgaattgtacaagatgcttcattttccaata |
20846 |
T |
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| Q |
201 |
atcaaacatgggtctacaata |
221 |
Q |
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||||||||||||||||||||| |
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| T |
20845 |
atcaaacatgggtctacaata |
20825 |
T |
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