View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17916_low_13 (Length: 214)

Name: NF17916_low_13
Description: NF17916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17916_low_13
NF17916_low_13
[»] chr5 (2 HSPs)
chr5 (11-145)||(42265317-42265451)
chr5 (11-97)||(43397687-43397771)
[»] chr8 (4 HSPs)
chr8 (10-99)||(36016928-36017015)
chr8 (25-97)||(26535898-26535968)
chr8 (25-85)||(22734918-22734978)
chr8 (18-97)||(23442281-23442357)
[»] chr6 (1 HSPs)
chr6 (11-85)||(2900364-2900438)
[»] chr7 (2 HSPs)
chr7 (19-85)||(9225566-9225632)
chr7 (18-64)||(30397171-30397217)
[»] chr2 (1 HSPs)
chr2 (19-97)||(30960465-30960541)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 42265317 - 42265451
Alignment:
Q  11 agcataggacatcgagaaagtgaataggtgatttctcaactatactgtaaacttgtgcccagtgctcatatatatattattaaaaaatagttttgcttac 110  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42265317 agcataagacatcaagaaagtgaataggtgatttctcaactatactgtaaacttgtgcccagtgctcatatatatattattaaaaaatagttttgcttac 42265416  T
Q  111 gggtgccctaagagcactctttaaggattcttaat 145  Q
    | ||| |||||||||||||||||||||||||||||    
T  42265417 gagtgtcctaagagcactctttaaggattcttaat 42265451  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 43397687 - 43397771
Alignment:
Q  11 agcataggacatcgagaaagtgaataggtgatttctcaactatactgtaaacttgtgcccagtgctcatatatatattattaaaaaa 97  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||| ||||| |||| | | |||||  ||||||||||||||||||    
T  43397687 agcataagacatcaagaaagtaaataggtgatttctcaactatactctaaacatgtgtctaatgctc--atatatattattaaaaaa 43397771  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 36016928 - 36017015
Alignment:
Q  10 tagcataggacatcgagaaagtgaataggtgatttctcaactatactgtaaacttgtgcccagtgctcatatatatattattaaaaaata 99  Q
    ||||||| |||||| |||||| ||||||||||||||||||||||||| ||||| |||||| |||||||  ||||||||||||||||||||    
T  36016928 tagcataagacatcaagaaagagaataggtgatttctcaactatactctaaacatgtgcctagtgctc--atatatattattaaaaaata 36017015  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 26535968 - 26535898
Alignment:
Q  25 agaaagtgaataggtgatttctcaactatactgtaaacttgtgcccagtgctcatatatatattattaaaaaa 97  Q
    |||||| ||||||||||| | ||| ||||| ||||| |||||| | |||||||||||  ||||||||||||||    
T  26535968 agaaagagaataggtgatatatcatctatattgtaatcttgtgtctagtgctcatat--atattattaaaaaa 26535898  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 22734978 - 22734918
Alignment:
Q  25 agaaagtgaataggtgatttctcaactatactgtaaacttgtgcccagtgctcatatatat 85  Q
    |||||| ||||||||||| | ||| ||||||| ||| |||||  |||||||||||||||||    
T  22734978 agaaagagaataggtgatatatcatctatactctaatcttgtatccagtgctcatatatat 22734918  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 23442357 - 23442281
Alignment:
Q  18 gacatcgagaaagtgaataggtgatttctcaactatactgtaaacttgtgcccagtgctcatatatatattattaaaaaa 97  Q
    |||||| |||||| |||||  ||||||||||| |||||| ||| |||||||| |||||||  || |||||||||||||||    
T  23442357 gacatcaagaaagagaatac-tgatttctcaaatatactctaatcttgtgccaagtgctc--atgtatattattaaaaaa 23442281  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 2900364 - 2900438
Alignment:
Q  11 agcataggacatcgagaaagtgaataggtgatttctcaactatactgtaaacttgtgcccagtgctcatatatat 85  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  2900364 agcataagacatcaagaaagagaatatgtgatttctcaactatactttaaacatgtgcctagtgctcatatatat 2900438  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 9225566 - 9225632
Alignment:
Q  19 acatcgagaaagtgaataggtgatttctcaactatactgtaaacttgtgcccagtgctcatatatat 85  Q
    ||||| |||||  ||||| ||||||||||||||||||| ||| |||||| | |||||||||||||||    
T  9225566 acatcaagaaaaagaatatgtgatttctcaactatactataatcttgtgtcaagtgctcatatatat 9225632  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 30397217 - 30397171
Alignment:
Q  18 gacatcgagaaagtgaataggtgatttctcaactatactgtaaactt 64  Q
    |||||| |||||| |||||||||||||||||| |||||| |||||||    
T  30397217 gacatcaagaaagagaataggtgatttctcaattatactctaaactt 30397171  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 30960465 - 30960541
Alignment:
Q  19 acatcgagaaagtgaataggtgatttctcaactatactgtaaacttgtgcccagtgctcatatatatattattaaaaaa 97  Q
    ||||| |||||  |||||||||||||||||||||||||  || |||||| |  ||||||  ||||||||||||||||||    
T  30960465 acatcaagaaaaagaataggtgatttctcaactatactccaatcttgtgtcacgtgctc--atatatattattaaaaaa 30960541  T

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